MmuINT0133085 @ mm9
Intron Retention
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37232875-37233455:-
Coord C1 exon
chr2:37233371-37233455
Coord A exon
chr2:37232957-37233370
Coord C2 exon
chr2:37232875-37232956
Length
414 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACT
5' ss Score
7.53
3' ss Seq
AAATATAATTCTTTTTAAAGGGA
3' ss Score
5.2
Exon sequences
Seq C1 exon
ATTATGTCCCTTACGTGAATGCTGTCGATTCAAGGTGGAGTTCATATGGCAACGATGCTACATCATCAGCACACTATATTGAACG
Seq A exon
GTAACTATACTCTCATTTCCTTTACTCTCAAACTTACATGCACCTAAAATAGAAAAATCATTACTGGTTGTCCATGGATTAAGCCTTGCTAATTTGAGCTGTGTAAAAACTTTCTGAATGCTGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACCTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAACTTTCTGGAACAAATTTTACATTTGGAATAGTGACTAAAACACATTCAGTGATCGTTACAAAGAACATAGAGTCATTATTGCTTTGGCTCCTTTATGTCTCACTTTAACTACAGTAAATATAATTCTTTTTAAAG
Seq C2 exon
GGACAGATTCATTGTTACTGATTTATCTGGTCATAGAAAGCATTCTAGTACCGGAGACCTTTTGAGCATTGAACTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376-Rc3h2:NM_001100591:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: