GgaINT0125477 @ galGal4
Intron Retention
Gene
ENSGALG00000001253 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr17:8786288-8786880:-
Coord C1 exon
chr17:8786796-8786880
Coord A exon
chr17:8786370-8786795
Coord C2 exon
chr17:8786288-8786369
Length
426 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGG
5' ss Score
8.47
3' ss Seq
TTACCTTTTTTCTCTCAAAGGGA
3' ss Score
9.58
Exon sequences
Seq C1 exon
ATTATGTTCCTTATGTCAATGCTGTTGACTCAAGGTGGAGTTCTTATGGCTCAGATTCAGCATCATCAGCACGTTATGCAGAACG
Seq A exon
GTATGGACTTTCTTTATATGTTTTCTGTAGCTTGCTAATGTTTAAAATCCTGAATACAGTTAAAACAAACAAAAAACTCCTAATAGACTTTAAAATTAAAATAATGGGCTTTTCTGTCCAACGTAAAGTCTTGGAAAACCTATCTCAAAATGAGTGGGAGTCGGGCACTGCCAATCTGTCTTGCCCAAGCCTGTGATCTTGAGTAGTTTCCCAGGTTTTCTTGTCGTACCTCAGGTGTTTACTTCATATAATGCCCTGGGACACTGCTAATATGCCCCCCTGCCCCGCCTTTGCCTTGAAGAGCTTGTTACCTTAGTCACCTAGTTCGTCCAAAAAACTAATAATGATAGGCCAACAGTCCTTTTGGATCCTTTGATTTAGAGTATTCATTTTCAATTCCTGATTTTTACCTTTTTTCTCTCAAAG
Seq C2 exon
GGACAGATTCATAGTTACAGATTTGTCTGGTCACAGAAAGCATTCCAGCACTGGAGATCTATTAAGTATTGAATTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253:ENSGALT00000001902:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]