BtaINT0123569 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94010161-94011439:-
Coord C1 exon
chr11:94011291-94011439
Coord A exon
chr11:94010530-94011290
Coord C2 exon
chr11:94010161-94010529
Length
761 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TGTCATTTATTTTCTCCCAGGGA
3' ss Score
9.19
Exon sequences
Seq C1 exon
GAGATCCTGGACATACAGCTTGGTATCAGTTCTCAAAATGATCAGTTGCTGAATGGAACAGCAGTAGAGAATGGGCATCCAGTCCAGCAGCACCAAGAGGAGCCTCTGGAGCAGAAGAGACAGAGTTTAGGTGAAGACCGTGTGATTCT
Seq A exon
GTGAGTGTTAGACGTAAGATTCATAACCACTGGGCATAAGCCATGAATATTTAAAGAGAAATAGATACACCATTAAATTCATTTTTGATTTTATCCTATGAGGGGAAAACCTCATAGTAATAAGGCAATGATTTGGTCAGTCTGGATTTTTAGGAGAGCAGAGGTAAATTTGAACTGTCAAAGTGCTCCATGCTAGTAGCCTCAAACGTGCTTTTTATTGGGATCAATGTTTATTTTTATACTTGAGCATCAGAAGGATAAGATGGTTGGATGTCATCACTGACTCTGGACATGAGTTTAAGCAAACTCAGGGAGATAGTGAAGGACAGGGAGGCCTGGCATGCTGCAGCTCTTGGTGTCACAAAGAGTCAGACATGACTTAGCGACTGAACAACAATCAGGTTATACTTTCACTGTCTGACAGGCAAGCATCAAAACTACAAAATGCAGAATGAAAACCTAAATAAAGGGTTTCCCTTTAAAAAAATCATGTTAAGATATTCTCGATCGTTAGTATAATTACTGCCAAAAATATGGGTTTATCATGAACTTGATAGTTTGTTGGCCTTAAACTAACCAATCTTCTAATTTTTTATTATAATTTTTCAAAAATGGGATTTTTTTTTAGTCACTAAAAAAAAAGATATGCTGTTTCTAGGGGCTCTTAAAGTGTGTTATAGCTTTTATTCAGCATGCATGGTTACTCCTAAAAGTTTTCGCTTAAAGCTAATTTGTTTTCAATGTCATTTATTTTCTCCCAG
Seq C2 exon
GGAAGAGCAAAAAACAATTCTGCCGGTAACTTCTTGCTTTAGCCAGCCACTCCCAGTGTCCATCAGCAATGCGAGTGGCCTACCCATCACCACATCTGTCAGTGTTGGCAACCTCATTCTGAAAACTCATGTTATGTCTGAAGATAAAAACGACTTTTTAAAATCCGTTGCAAATGGGAAGATGGTTAATAGCTGAAAGGAGGTTCATCTTTCAAATTTGTGACCATACCATGGAAGCATTTACACTAGCTTTTTATATATATAATATATATTATATAATGTATATTTTTTTTAAAAAAAAGATATTACTGGGGGCATCCATTTCCTGTGGACTCTTTGATACTTTAAGCCCTCTTGCATTAGCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867:ENSBTAT00000032789:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGACCGTGTGATTCT
R:
AGGAAATGGATGCCCCCAGTA
Band lengths:
347-1108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development