BtaINT0123572 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94037487-94043567:-
Coord C1 exon
chr11:94043392-94043567
Coord A exon
chr11:94037688-94043391
Coord C2 exon
chr11:94037487-94037687
Length
5704 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTCTCCTTTCTATTTTTAGGTT
3' ss Score
13.84
Exon sequences
Seq C1 exon
CTATGCAGGAAGAAGCTTTGAAGTTGGTGTTACTGGCATTAGAAGATGGTTCTGCTCTCTCAAGGAAAGTTCTGGTACTTTTTGTTGTGCAAAGACTAGAACCAAGATTTCCTCAGGCATCAAAAACAAGTATTGGTCATGTTGTGCAACTACTGTATCGAGCTTCTTGTTTTAAG
Seq A exon
GTAAGTAGCAAGCAACCATCTGAACATTGCATGCCTGGAATGGGTGTTACCTGGTCTAGAGGCCCCAGAAATAAAAGAGATAAAGGAGACTTTTCCTTCTGTATTTAATGCATCTGTTAACACTGTAGATGTATAATACTGCTATGCGTGGGTGTAAGAACACATAATGTGAAGGTGTCAGTAACACTATGAGGAAACAAGTTTGGTGAACTTGACTCTTGGAATAGTAAAAATGAACTGAAGAAGCCTAATTCATTTATATTTACCACCTTAAAAGAGAGTCGGGAACCATACTGAAAACTTAATAAAAGAAGGCAAATATTTTAACTTCCCCATTATTATTTTTATCTCTTTCTCTGTTGTGATTAGATTAAAGCCTTTAAACTGAAGGTAGCCCGTATGTTGTCCTGGGGACAACAGGAGAGTAAAAGTTGAGGATTGCCCACTGTGCATTTAGATAATAAGGTTTTTGTCAAAGAGGGTAGGGATGAACCCTAAGCTATTTCAAAATGTAGTTTCCTTGTCAGATAGGCTTATGGGTGATGACAGGTACTGAGAGACATGGAAAGAAGGCTGAATCCTTAAAGTTTTTGCATGATACAGGAATGTAAGTTGCTGGTGAGGTCTTGAGCAAAGGGACCACGTCTTGGAATAGAAAGGCCCATTGGCTTCTATAAAAGTAAAACTTCTGGATTTGAAACCAAGGCTTATTTAAGCTATTTTGCTGATTTTATAGCTCAAGAGTGATAACGATATAAGCAGAAAGAGGGTTTTTTTTGTGTGTGCACTGCTTAGTATGAGGTAACAGGTTAATTGTTGATGAAAATATGTTCAAATGAGTTATCTTCACAAATGAGAGTTGGACACTCTCTGCCTGCTAGTTACAGTGCTTGATTGTGTCCTTAGGGAAACAACTGAAACCAATCTCTGGTTCTTCAAACAATGCTTTTGGCTAAGCGTCCAGATGACCGAGCTCATTTATCATCCTGAAGTGACCACCTAGGTTCTTACACTGTGCCTTACAGATTTAATGTTGTTCTTTTCCTCAACAGTATCATACAGATTTGTGGTTCATAATTGTCATACATCTACAACTGCTCCTAATACCTGACATTTGAATAACACTAAGTTTAGAAAGAGATTTCAGTATCATGCTCTCATTTCATCCTATACTACTGCCCTATAGTTTAAAATGTTAAAAGCAGTGTTTTGGTGAATAAAAGGGTATCATGCTGACAGTTGCTGAAAGACCTCTCTCCAGGGACATTTACTCTAGTAAACTACTGTGAGTGAGTCAAGATATTTTCCTTGACTCTAGACTTAGAGACCTGAATTTTGGGCATTCCTCAGGAGCAGAATCACAAACGAGGTCACATACTACATGTTATCAATTTTATTAATTTGTAATTAGAAGTTCAGCTCTTAAATGACTTTAATTCTCATGTTGTAGGTATTTTCCAGTAGAAGATTATCAAACCTTTGCTTGCTTAGCATGAAGTCAGAGCAAAGGGAGTTGATGATTCCAGTGTTTAATGCAGTGGTTCCAAAATGAAGATACACATCAGAATCGCCTATGGGATTTTGCAGAGTGTACATACATTCCTGGTCCCATCCCTGGATATTTTATCTGATAACAAAAATACATGAGTGCAACTTGAACATTCATACATACTTTTTAATTATGTGGTCTTCGAAGCCACGGATTCTGATTACTTGAAATTGTAATTTTCAAAACTTCATGGGTGAGAAAAAAAAAAAAAAAAACTTCATGGGTGATTCTGATACCTGTTATTAGAACTTGACTAGGCCAGGCTTTGCAAGCCGCCTATAATACATACATCTTTACAGTTCAGGTGGATAGATGTTCATACTACCCAAGAGCACCCTGTACCCTTGTGGTTGGATGAGTGTTAACCACCTTCTGGTTTTTTAGGTTTCTTTTTTGTATGTTTTAGATTAATAATTCTTGCTTTTGTTTCTTTAAGTATATTATTTTGAGATTTCGAAGTTATACTCTGCTCTTTCTTAAATTAAATGTAAGATCATGTTGATTAGAATTTTGGGTCCCATACTTTTCTATAATGTATATATTCTCAAAGAGAATTGTGAATTGATACTATTAAGTTAACTCTCAGATTGATTTCCCAGTCTTTATGTTCTAGAGGTCATATTACTGTTGTCTCCTGTGCCACCGGTAGCAATTGAAACAGCCAGTGAGGTGGTCTGGGGATATTTCCATTTTACTGATGAGGAAATCATCAATTTGAAGAGTTTGAACAATGTGCTCAGTCTAAGTTTCAGAGCCTGTACTAGGCCTAGGTTGTCTGAATTCTAACCAAGTATCAGATTTCACATGGCCATTAGTAGATTTTATGGTTCAGGAATAAGTGTATTTTTTATTGTGAAAATTAACTAGCTACATACTTTTAGATAATTAGTTTCAGTAAGACATGTAAAACTCTACCTTTGAATTTGTTTTTTGTCACTTAAGTATAGATTAAAGCTGTAAAAATACCCTATGCTACGCTAACTCACTTCAGTCGTGTCCGACTCTGTGTGACCCCATAGACGGCAGCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTTGAAAGTGAAAAGTGAAAGAGAAGTCGCTCAGTCGTGTCCGACTCGTAGCGACCCCATGGACTGCAGCCTACCAAGGTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGAAAAATACCCTAATAATCTTTATTGTGGTGGCAGGAAATTTCTCAATTTCTTAATCATCAACCGTAGTGCTCAGTTCAGTTCGTTTCAGTTCAGTCACTCAGTCGTGTCCGACTCTTTGCGACCCCATGAATCCCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACCCAGACTCAACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTCCCAGTGAGTCAACTCTTCGAATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGAATAACAGTTCAAAAGCATCAATTCTTCGGTGCTCAGCCTTCTTTACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTGGGAGCCCCCAAAAATAAAGTCTGACACTGTTTCCCCTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCGGATGCCATGATCTTTGTTTTCTGAATGTTGAGCTTTAATCCAACTTTTTCACTCTCCACTTTCACCTTCATCAAGAGGCTTTTGAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGGCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCGTTTCTCATGATGTACTCTGCATAGAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGATGTACTCCTTTTCCTATTTGGAACAAGTCTGTTGTTCCATGTCCAGTTCAAACTGTTGCTTCTTGACCTGCATACAAATTTCTCAAGAGGCAGGTCAGGTGGTCAGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAGGGCTTTGGCATAGTCAGTAAAGCAGAAATAGATGTTTTTCTGGAATTCTCTTGCTTTTTCCATGATCCAGCAGATGTTGGCAATTTGATCTCTGGTTCTTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCACGGTTCACATATTGCGGAAGCCTGGCTTGGAGAAATTTGAGCATTACTAGCATGTGAGATGAGTGCAATTGTGTGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGGAAATTGGAAAAAAATTGAAATTGGAAAAAAAATGTACATACTTTAATTAAAAAATATTGCTAAAAATGCTTACTGTCATCTGGGCCTTCAGCAAGCTTTAGTCTTTTTGTTGGTGGAGGGTCTTACATCATTGTTGATGACTGACTGACCAAGGCGGTACTTGCTGAAGGTTGGAGTGCCTGTTGCAATTTCTTAAAACAGCAGCACAGCTTGCCCCATGAATTGAGTCTTCCTTTCGCAGATAATTTCTCTGTGGCATCCAGTTTACCCACAGCAGAACCTCTTTCAGAATTGAAGTGGATTCTCTCAAACCTCGCTGCTGCTTTATCAACTAAACTTATGTACTTTTCTAAATCCTTTATTATCATCTCAACAATCTTCACAGCATCTTCACCAGGAATAGATTCTATCTCAAGAAACAACTTTCTTTGCTTATCTTTAAACAACTCCATTAAGGTTTTATTGTGAGATTACAATAATTCAGTCACATATTTAGGATCCACTTCAGTTCTTGTTCTTTTGCTTTTTCTACCATGTCTGCAGTTACTTCCTCCACTAAAGTCATAAGTCCTTCAGAGTCATCCATGAGAGCTGAAATCTTCTAAGTTCCTGTTAATGTTGATATTTTAACCTATGCCCATGAATCACAAATGTTCTTAGTGGCATCTAGAATGCCAACAGGTTTTCAGTCTACATTGCCCTGATCCATCAAAGGAAATACTATCTATGGCCGTGATAGCCTTACGAAATGTATCTTCTAAATAATAAGGCATGAAAGTCAGAATTACTCCTTGATCCATGGGCTACAGAGTGGAAGTTGTGTTATCAGGCACGAAAACATTACTCTTTTCGTACATTTCCATCAGAACTCTTGAGTTACCAGGTGCATTGTCAATGAGCAGTAATATTTGGAAAGGAATTTTTTTCCTAAGCAGTAGGTCTCATCAGTGGGCTTCAAATTCCCAGTAAACCATATTGTAAACAGATGTGCTGTTATTTGGGTTTTGTTATTCCATTTCTAGAGTACAGGCAGAGTAGATTCAGTGTAGTTCTTAAGGACCTAATATTTTGGGGGAGGTAAATGAGGATTGCTGCTACTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCTCTGTCCCTGGGATTTTCCAGGCAAGAATACTGGAGGGGGTTGCCATTTCCGTCTCCAAAATGAGGATTGGCCTCAATTTAATATCACCAGTTACATTAGCCCCTCACAGAAGAGTCAGCCTGTCCTTTGAGCTTTGAAGACAGGTCCTGACTTCTCTCCGACTGTGAAAGTCCTAGAGTGTCTTCTTAGAATTTTTAGTAAGTAGATTATTTTTTTGTACCTTCTTCATGTTGTATCTGATAGGCTATAGGTACCTCCCCCTTTTAAAATAAAGAAAAAGTTGGTTGGGGGAGTGGTGAGAGCAAAGCAAATCTGATGTCTTTTTTTTTTTTTTTCTCCTTTCTATTTTTAG
Seq C2 exon
GTTACCAAAAGGGATGAAGACTCTTCCCTGATGCAGCTAAAGGAGGAATTCCGCAGTTATGAGGCTTTACGCAGAGAACATGATGCCCAAATTGTTCATATTGCTATGGAAGCAGGACTCCGTATTTCACCTGAGCAATGGTCCTCACTTCTGTATGGTGACTTGGCGCATAAATCACACATGCAGTCTATCATTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867:ENSBTAT00000032789:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0028516=Citrate_synt=PU(25.5=58.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development