MmuINT0133094 @ mm10
Intron Retention
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37400529-37405419:-
Coord C1 exon
chr2:37405244-37405419
Coord A exon
chr2:37400730-37405243
Coord C2 exon
chr2:37400529-37400729
Length
4514 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTTTCCTTCCCATTTTTAGGTT
3' ss Score
13.35
Exon sequences
Seq C1 exon
CTATGCAAGAAGAAGCCTTGAAGTTGGTATTGCTGGCATTAGAAGATGGTTCTGCTCTCTCTAGGAAAGTTCTAGTACTTTTTGTTGTGCAAAGACTAGAACCAAGATTTCCTCAGGCATCAAAAACAAGTATTGGCCATGTTGTGCAGCTATTGTACCGAGCTTCTTGTTTTAAG
Seq A exon
GTAAGCCCTGTACAACTGTCCAAAGACCATGGGTTTATACCTGAGATGGAGGCTTCTGAGAATTTATGTTGCCAATCTAGTGACCCTCAGAAATACAGAACACTTCTAAAGTAAAGAGGAGTGGTTTTTCACTTTTCCTTATTCATTAATTCATCTTTGACACCAGATACTTGTTATTACCAGTTGGTTTCAGAAATATTGAATTGAACATATGTAAAATCCTAACTTTAGACTCTTCGAGGAACTTGTAAAAATGAATTGAGACATCTCACTTCTTTACATCAATTGCTTTAACAAATATTGCAGACTTCGATAGAGGAGGAAATTTTTTTAATTCATTATTTTCTTTATCTTTTTTGTACTGATTAAAGTCTTCAATATAAAATTAGTCCACAAGAAATTCAAAAGTTGAGAAGATTGCCATGCTGTATGGTATTTTGTTTGATGGGATGTGAAAACTATTTTTTAATGGAATTTTTAGGTCATTGATAGATGAGAAAAGTTACCTGAATCCCTGTTTTCTATCTGTTAACAGTTGTGGAAAATATTTCATCTGTATCAGGGGCTTCTACCCTGCCTTTGATTATTCAGTTCCCTGATAAAAGACAAACAACTTTTTTTAATTGTAATAACCTTTAAAGGGGCTAGAGAAATGGCTCAGCAGTTAAGAGCACTGACAGTTCCTCCTGAGGTCTTGAGTTCAATTCCAAGCAACCACATGGTGGCTCACAACCATCTGTATTGGGATCCAATGCCCTCTTCTGATATGTCTGAAGACAGCTACACTGTACTTACATACATTGAAAAGAAAGAAAAGAATAAGCACTAGAACTGGGTGGATATCTACTCTCTAAGCTAATAAAATCTATTTTCCCATCAATAACCCTGAAATATAATTTGCCATGTTCCATCTAGGCTGCTTTGACTCACATTACCCATAGCATGAAAACACCTTTCTATCTCTTCTTGTGGTTCTCCTCATACCCCAAACCTGCCTATGTCTCTTCTGCATAGCTATTAACCATAGTTTTAGATTAAGAAGCAAGGTCACATTGTATGTGTCAATTCTCTGGTCCCTGGGAGCAATCAGGCCTTGGGGGCCAGTATTTAGCTTAACATACATAGCAAAAGAGCAAACCTCAATAGTTATTCAAGTGTAGGTTGTTATCTAGCACCTGAAAAACCACAGAAATTTATAAATCTCACTGTTTTTGTGAAAGTAAATCACACGTTACCTTCCTTTGCTCGTTTTCAGGCTCTAAGATTTAAAAAGGTTTCCTTGGAAGTACTCTAATTTAGAAAACAGGTAGTTGATGATGGAAGTATGTTCAAGTGGATTTATTTACCTTTGCTAATGAAGTTTGGATACTTTTGCCTGATAGTTGTAGTGCTTGAGTTCATGTCCTTAAAGGAGATAAGGATTTAAGTGATGCTCTGGTTCTTCAAACATAATGTTTTCAAGCTGAGTAGCCAAATTAAAGAGATCATTTGTCATTCTCATTTGTCATAAGCAACCAGATTTTTGTGATTGTATGATCTTTCCTCAGAATTAAGATCGCTATAATCATGATCAAATACAACAGATTATCAGTTAAAGTGATTTCTAATAAGAATTGTAATTCATGGCAATGAAATAACTTTGTGGATAAAGGTGCTTTGTCTTCTGAGCCTGAGGACAAGTTTGATGCCTGAATCCCACATGATAGAAGGAGAGTGCTGATGGCTGCTACTTTTCCTCTCATGTCCACACACGTGCAGGCATGTACATGCCCACATATATACTTACCAAATAAATAATATCCCTATATTGATAGATACTTTTATATGCAGATTCTTTGCTTACTGGACATGGAATCAGAACAAGGAGAATTAAGATACATGCATGGTGTGGTGGTTCCCAACTGAAAGCACAGCATTCGAATCATCTGCATTATGTTTCTGGGCTCTAATACCAGGAATTCTTATTCAGTAGATTTGAGAGTGTGTCTTTCAAAGCTTCATAAATAAGATGTGATTGCTTTGTGTTGGTTTTAAAGACATGTTCTCCTGTATCCTAGACTGACCTTGACCTTGTTATTTGGTGAGGATGACTTTAAACTTTTGATCCTCTTCTTTTTTACCTCTCAACTGCTGGGATAATGGGTGTGCATCACTGCAATGTTTATTTTTTAATGTAGTGCTGGGGATCAAACGTCCCCTTTGTTCATGCTAGGGAAGCATTCCACCAACTTAGCTACAACTTTAGCCCTTCACAAATGATTTTGGTGCATATTAGTATTTTAAATGGCTCGGACTCTCTTTATTACTGAAGTCTTCAACTGCTTAGGTGCTTTTTGCTATCCATGGGGCACATGTACACTATATGGTGCTTAGGTTTGTGCTATAATCCTCTAGATAGTTAGTTTTCTCCTCCCATTTAGGTTAATAATTACCCCCTTTACTTTCTGATATTCTCTTAAAGTGGGTTATAGAAGAATACAAACTTTCTAAGTTACATTTACCTGCCCACTCACTATCAAATGTTTAAGATTGTATTGATTGGGGCTGGAGTGACGAATGGCTCAGTGGTTAAGAATACTTGCTGCTCTTAAAGAAGACCTGGGTTTGATTTTCAGTATCTGTATGGTGGTTCTGGGGAATCTTGATACCCTTTTCTGGCCTCCATGGACACAAAGTAACACCTGTGATGTACAAATATACATGCAGGTGAATACTCATTCACATAAAATAAAAGAGCATATTAATTACAATCTATAATATCTCAAACTATATTTTTAGATTCCCAAATTTATGGCCTTTCTGAAGTGATGACTGACTTTTCTCAGTCTCATGTTATTGGGGCATATTACCACTGTCTGATATACCAGCAGCAGAAATAAAAATCATTACTAAAGCAGGACATAGAAGTCTACACCCCATAATCCCAGTACCTGGGAGGTTCAGCCAAGGGAATTTCTGCAGTTTTGAGGCTATGTTAGGTGACAGAGTAAGACCCTCAATACACACATAACCACTAAGATAGCTGGAGGGTTTTTTTTTTTTTCATTTTTTTTCTTTTACCAATTAGGAAAACAAAATTATGTTGTTATGACAGGGTCTTATTATATAATACAAGCCAAACTTTGTGCTCATGATTCTTCTGTTTCGGCCTCTTGAATGCTCGTATTTTAGGCATGCAGCATCATGCTCAGCAGGAAAATTTGAGTTTTGAATAGATAAATGATTTGTCCAGTCTGAATCTCAAATTTTGGTGTGGTTTTATGTGCTTTGAGTCTTAAGTCTCGGAGCTCATACAGTGAGATGGATGAAAGACAAAAGAAAGTTCCCAGAAGCTATGGCCAATACAAACAAAATCGAAGATGAAGATTCATTCCCAAGGTTATCCTCTGACCTACACACAGACATATACAGACACACACAGACTTAATCGCAGTTAAAACAAGGAAAACACTTACTTCGCGTAGCACTGTTCTAGGTACACAGTTTCAATCTTAGGAATTCTAATCTCCTTTCTGAAACTACAATATCTATCTGGATTTCTCAAAGAACCACAGTAAATAATGCTCCTACTAATCTACCCCAGCCCTCTTAGAAAAGTTGTGATGTACTCAGCCTGTTCCTCCTCAAACAAGAAAGCAGTAGTCTTTTTCACTAAAACAGTTAAACAAAACAAAACAAGACAAGAAACCCCCACTTTCTAAGCAAGGAAAATGATAGTGTTTTTGAGACATGTGTCTAATCATAGTGCTTCTGTAACAACTCTCAGTGACTTTTCATTCCCTTCAGAATTTAATATCTAATTTACCATAGTACTTACGGTCATCTGTGAGTCTTTTCTTGCATATATGAGAACTTTTAATTCTGTCCTCTGCTCATTTGGGGTGGTTGGTTGGTTTGTTTGTTTAGTAGGTTGCTGTTTTGTTTTATTTTCTCCCATCTTCTAGACAGGGTTTCTCTATGTAGCTCTGGCTGTTCTAGAAATCACTGTGTAGACCAGGCTGTCCTTGAACTTATAGAGAATTGTCTGCCTCTGCCTCCTGAGTGGAGTGCTGGGATCAAAGGCATATTTTACCACTGCCTGGCATTGTTTTTTAGAATTTGATTTTCCTCTTTTTCCTAAAGAAATTCTATTTTTAGAGATGTAGCTCACATAGTCGTGAGCCAAGAGAAAACATTTTCTGAAAATTTTCCTTCTATTTACTTGTCGTATTTATTTGGCTTTGTTTATGTTGCTGTAGACCCTATAACTACACCCTTACTATAATTTTTTGTTTCTAAATCTTTCTTTCCTGCCAAATGCTGATGAACTCAATGAAGAAAAGGATTGCGTACATAATTATATACTTTCTGTTTTGTTCTGAAAAGGAGTTTCTATTGGCATTTTGTACTTTTTGTGGTGTCTGGTATATAACCCCTTCAGCCCAATCCCCACACCCACAGTAAATGAACTGGATAAGAGAAAAAGGCAGACCAATTCTAATGAGTTTGATTTTTTTTTTCCTTCCCATTTTTAG
Seq C2 exon
GTTACTAAAAGGGATGAAGACTCTTCCCTGATGCAGCTAAAGGAGGAATTTCGGAGTTACGAGGCACTACGCAGAGAACATGATGCCCAGATTGTTCATATTGCCATGGAAGCAGGACTCCGTATTTCACCTGAGCAGTGGTCTTCACTGCTGTATGGGGACTTGGCTCATAAATCACACATGCAGTCTATCATTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376:ENSMUST00000112934:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0028516=Citrate_synt=PU(25.5=58.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types