DreINT0125626 @ danRer10
Intron Retention
Gene
ENSDARG00000063050 | rc3h2
Description
ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
Coordinates
chr10:9776696-9779118:+
Coord C1 exon
chr10:9776696-9776871
Coord A exon
chr10:9776872-9778917
Coord C2 exon
chr10:9778918-9779118
Length
2046 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
TTCTGTCCATCTTTTTTCAGGTG
3' ss Score
12.68
Exon sequences
Seq C1 exon
CCATGCAGGAGGATGCTCTGAAGCTGGTGCTGTTGGCTCTGGAGGATGGATCTGCTCTGTCAAGGAAGGTTCTGGTTCTGTTTGTGGTGCAGAAACTGGAAGCGCGGTTTCCTCAGGCGTCAAAGACCAGCATAGGGCATGTGGTTCAGCTGCTGTATCGAGCCTCCTGCTTTAAG
Seq A exon
GTCAGGGCGGAAACCGTTGAGCTAAAACTGCTGATAACTTTATGGCCATTACACTCAGTGCTCCATCTCTGCCATGAATCAGGAAGAGAGTCAGGAAAAGAGTTATGAGATGTGTTAAGTGTGTCGTAACTTGATATGGTGTGGATATAAAGTGCCTGGCAATGGCAATATCTTAGAGCGCTTTTACACTGGCACTTTTGGTGTGCACTCGGGTTCATTTGACCACGGAGTTCAGTTGGTTTGTGTAATGTGAACCTGAGTCCCACTGAAAAGGATGGTCGGGGTGTGGTTCAGGGTGCAAATTACAGGGGGTTTTGACCCCTAATTAATGCTTGATCCCCCTGAAGGACATCAAATTAGAGATCTGCGCAGGACTAAATTTTGAATCCCGCTCCCGCCAGGTTTTAGCCCGAACCCAACCGCTCCTGCTTATATTCAGCATTTGTTGTCTCGCTGCCCGACCCCGCCCCATTTTCTACCCGCCGTGCCTGATCTTGCTAAAGAGCAGGGGGGAGAACAAAAACGAAATCCACCCAGCTATACAGAGTCCAGATAGCCTATAACAAGCTGTCTGTATAAACACACACACACACAAACACCAAGCGTACACACACACACAGACAAAGCTCTCTCTCTCTCTCATTCGCGCGCACACACACACACACACACACACACATACACACACACACACACACACCTCTCATTCGCGCGCGTGCCCATACACACACACACACACACACACACAGCAACGAACAAACAAGCTAAACACAGCATCGTGCTGTTTCAGTCACACACATAACGTTACATACGCGTCCTGCGCATGGACCGTCAAAATAGAGCCCATAATCTTCTTATGATACAAATACAGATTAAATAGATCTGATCATGAAAGTGTTTGTACTAACCATACTGCACATTTTTATTTATTTAACAATAACTTATATCTGCTCCCCAGTGTGAAAAATATTTTTCAACTTGAAACTGGATCAAAAATTCATCAAGAATCTGTGTGTGAAATTGAAACTTTGGACACTCAACCTTTAGCAGTTGTTCAGTTAACAATATTTTTTTCTCTTATGTTCCTGCTCTCAGCTGTTTCTACCATTTGCTGATGGTAAAAAATAAATAACTGAAGTGACCTTTAATTAGTATTTTGCACTTTAAAAATATATTTTTGTTTATTCAATTAATATATTTTCGGGATCTTAATATTCATTCTTTAATTTTTTAATATATATTCTTATGTAAAAGGTTCACATTTATGCAACCAATATTTAATAAATTAGTTGTTTTTTCCCATACTTACTGTTGCTGACTTTTGTTTTCAGTTTGATGTAGCTGTTCATACATTCCACTCAACGCAATAGGTAAAAGTAAAGTATTCATGATTTGAGCTGATATCGGATTTATATCGGTATAGGTTCATACTAAAGGCTGCAATATCGGCATCGTATCGGAAGTTAAAATGTTGTATCGGGACACCCCTAGTTTATGCAAAAAAAAAAAAAAAAAAAACATGTAAAAAACAAATGTCCGATTTTTGAGTGTACCAGTGAACAAAAGAGTCTCCATGACTTCCAACATATTTCTGGTCATTCCTGAAATTTTGGCTGTGTGAAATTTGCTTGTCTTGTTGTTTTTATCAGAATAGCTTGTACAGTCTATACCCTCTTCTGTAAATCATTTGCATTTAAAGGCATACACCAAAATTGTTCTTTTGCTCATACAGATGTTTATTTGTCAAGTTATAATAAAATTATGTGGGGTTTTTCTAGCTGAAATTTTACAGATGATGCTTATCCTACCCTATGATTTTGATTAGACAACTACTGTAATTTAAATTAATTTATAATTTACTAGATTAAAAAAAAAAGCATTGCTCCAGGAATCTTATGGAATCCTTCTTAGCTTGATTTACCATGCCGCCTTATGAAATCAATCACCTTAATAAGATCATTTACATCAAATGCCAATCAGCTGATTTTGATGCAAACTATAGAGCTTTGTGCTAAGCGTGTACATGCATTTCTGTCCATCTTTTTTCAG
Seq C2 exon
GTGACCAAACGTGATGAAGACTCGTCACTTATGCAGCTCAAAGAAGAGTTTCGCACGTATGAAGCCCTGCGGCGAGAACACGATGCTCAGATTGTTCACATCGCGATGGAAGCAGGACTGCGCATTTCACCTGAGCAGTGGTCATCTCTGCTGTACGGCGACCTCACGCACAAATCTCACATGCAGTCCATCATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063050:ENSDART00000147997:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]