BtaINT0124201 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019721 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr11:104365133-104367667:-
Coord C1 exon
chr11:104367479-104367667
Coord A exon
chr11:104365468-104367478
Coord C2 exon
chr11:104365133-104365467
Length
2011 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
TTTGTTTTGGGTTCTGTTAGCTG
3' ss Score
4.94
Exon sequences
Seq C1 exon
GCCGGGCGCGCCCCGCGTGGCCCCGCGCCGGACGCCGGGCCCGTCAGGAAGCCAAGGCGGAAGAAAAGAGTCCGGAAGAACAAAGCGCGAGAAGCCGGCGGGACGCCGGGGGTCGACCCCGGAGTGGTCGCGGTGCGGCCCCCAAAGGCCCCGGAGGACTTTTCCCCGAACTGGAAGGCGCTGCAGGAG
Seq A exon
GCAAGTCCGCAGGGGCCCTACGGGCGGAGAGGGGGACGGTGTGTGGGTCACGCGGGGCGCGCGGGCTGGTGTGGACTCGGGGAGCAGAGCCGATCGCAGGGGCCGGAGCGCGTGGGCTGCTGAACAGCAGAGGCTCGATGCAGAGGGTCCTGCTAACCGTTCAGGGTAGTCGCTCAGTCGTGTCCGACTCTTCGCGACCCCATGGACTGCAGCACACCGGGCCTCTGTGTCCATCACCAACTCCTGGAGTTCACTCAAACTCATGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCCGCCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCGATGAGTCAGTTCTTCGCATCAGGTGGCCAAAGTATTGGAGCTTCAGTCAGTCTCAGCATCAGTCCTTCCAATGAACACCCAGGGCTGATCTCCTTCAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTTTTCTCCAACACCACAGTTCAAAAGCTTCCATTCTTTGGCGCTCAGCTTTCTTTATGGTCCAACTCTCACATCCATACATGACTACTAGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGACAAAGCAATGTCTCTGCTTTTCAGTATTCTATCTAGGTTGCTCATAACTTTCCTTCCAAGAAACAATCATCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGTCACTGTTGCCACTATTTCCCCATCTATTTGCCATGAAGTTCTGGTAACACTGGGCTTTTAATCGGTGACCACTGCCACTGATCACTGAGCGCTTCAGATGTGCTTTAGACACTGCTGGATGAGATGAGGTGACGTGTTCATATTTAACCTGAGACTGACTCTCAGATCTTTTATCTTCTGCATTTTACAGATGAGGAAATGGGCCCGAAAGTTTAAGTAGATTGCAACCAGGTCAGCAGAACCAGGAGTCAGACCCCTCCGCTCCGCCCAACTCCCTGCTCGTAATGTCACGTTATACCTCCTTGCTTTTCTGGCCCATCAGTGGGCCAAGGCTCACTTGCAGATTACTTACTGGTCACTATCTCCTGAGTGCTGTTTGTTGGCTGTGCTTCACTCGTAAATTGTCTCCGGCTCCACCGGAGCTGGCTGCTGCTGTACCACTTATTTCTGGATGAGGAGACTGGGAGGGGCTGAGGGATGAGTCCCAGGGTCACACAGCCAGCACCTGGGGTGCAGCTGCACAGGGCTGGGTGGGAGATTGCACTCTTTGCTGCTGCCAACCCTCGTGGTGTCTCTGCAGCCTCTTCTGAGCTCCTGAGATCTCTCCCGGAGCCTCAGAGTGGGTGAGGGGGAGAGCAGAGAAGGGCTTCTGAGACTGTTAACCTGCGCCTTAAGGGGGAAGTCCAGATCCTTCTCCTGTCCTGACACACAGACCGTGAAATTCCCTCGGGCAACCCCAGGGGTCTTGGACTTCCTGAGCTGTGACTCTGCCTCTTTCTCACAAGAAAGTAAAGCAAAAAGAAGCGAGCAGAAGGATGGATATTTATTGTGGGAAGAAACTTCACGTTTTCTCTAATTCATACAAGAAAGGCAGTTCTCCTGTTCCTTAAACATCATGGGAACAGGTAGGTAGGATCCGCCTCCTCACTCAGCTGGTTGCTGCACAGCAGGGTCTTAACCCAGGGCACTGGGCTGGGAGACCTCAGCCCTCCCTGGAGGGGAGCAGGGGTGTGGTGGTCCACCCCGTGTCATTGGACGTGACCGTCTCTTCCTGAGACCCTCACAGCAGGAGCAAACCAAGAAATCTCACTGAGAAAGTGGCTACCGCGTGCCAGCTGTGAAGGAGTCAGCTCTAAAATAACTGAACATGGGAACAGGCTGCTTTTAGACACAGACACACTTTTTTTTCAGTCTCTAGTGTGTGATTTCCAAATTACAACGTGTTGTGTATTTTGTTTTGGGTTCTGTTAG
Seq C2 exon
CTGCTGAAACAAAGATCACGGACTCCACAAGAGCCTCCACTTCTGTCTCAAACGGATTCCAAAAAGCAGCCCCAGCGCGTCCAACAAAATAGAAACTCCATCTCAGATAAAGCAAAGACAGATGCGATGGGGACGGAAAACACAGACCCCGAGGTCACAGGGGCCTCCGGGCCCTCGGGATCGCTGATGAGCAGGAAGATACAGGCGCAGCCCAAGGAGAAAGGGGCCCAGAAAAGGACCAATGGAGACATTTCCCCGCAACAAGGCGACATCAAACATAAGAAGCGAAAAGCGAGGGAGCCGACCGCCCCCTCGCCTCCAGCCCCGCCCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019721:ENSBTAT00000026283:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development