GgaINT1023592 @ galGal4
Intron Retention
Gene
ENSGALG00000003166 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr17:6905671-6906262:-
Coord C1 exon
chr17:6906035-6906262
Coord A exon
chr17:6905795-6906034
Coord C2 exon
chr17:6905671-6905794
Length
240 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTTTTCTTTGGCCCTTTTAGCTA
3' ss Score
8.78
Exon sequences
Seq C1 exon
GCCGGGCGCTGCACCGTTCCGCCGTGGTGCCGCACCTCGCCGCGGTCCCGCATGGCGAAGGCGGACCCCGAGGCGGCGGCCCGCGGGAAGGGCCGGAGGAGGAGAGTCCGGCGGGGCCCCGGGCAGCACGCGGGGACGGCCGCGCAGAAGGGCCAGAAGGCGGCGGCAGTGGCGGCCCTGCCCCGCAGCCCTCAGGAGTTCTCCTCCAACTGGAAGGCGCTGCAGGAG
Seq A exon
GTGAGGGCGAGCCGGGCCGGCTGCCGTGCTCTTCATTAATGAAGTTCCACGCTGGCTGTAATCATTTAAAAAGACTTTTTGTGTCTAATAATAACCCACGGGGATGCGGCGTTACAGCCAGCAGAGCCCTGCTCTGCTTCAGTCCTCAGAGCAGTGATGTCAGGGGAGAGCTGAAGGGAGACGATCAAGGAGATAATGTCTCTCTCTTCTTTTTCCCCCCTTTTTCTTTGGCCCTTTTAG
Seq C2 exon
CTACTGAAGCAGAAGGCAAGCACCTCGAATGAGCCCCTCCCTTCAGCTCAGACCTACACCAAGAAGCAGCATCTGCTCAAAGAGGGAAACAGCCAACAGGTTCCAGCTGGCACTGGGGATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003166:ENSGALT00000005016:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGAGAGTCCGGC
R:
TTTCATCCCCAGTGCCAGCT
Band lengths:
258-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]