HsaINT1029152 @ hg38
Intron Retention
Gene
ENSG00000148300 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr9:133414665-133418044:-
Coord C1 exon
chr9:133417620-133418044
Coord A exon
chr9:133415012-133417619
Coord C2 exon
chr9:133414665-133415011
Length
2608 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TATTTTATTTTGGGTCCCAGTGG
3' ss Score
5.69
Exon sequences
Seq C1 exon
GCGCTTCCGGGGACTGGAGCGTGCGTGCTGAGGTATGCGCAACGCGTGCGGGGTCTCTTCCGGAGTCTTTTCCTGGACGGGGTCCCTGCGGTGGGTGTGTTTCGGCCTGGCCTGGGCAGGCGCTTGTGCTGCCAGGGCGCCGGGCCCGGGGAGGCCGGGGTCTCGGGTGGCCGCCGGCCCAGGCGCTGGACGGCAGCAGGATGGGGAAGGCGAAGGTCCCCGCCTCCAAGCGCGCCCCGAGCAGCCCCGTGGCTAAGCCGGGTCCTGTCAAGACGCTCACTCGGAAGAAAAACAAGAAGAAAAAAAGGTTTTGGAAAAGCAAGGCGCGGGAAGTAAGCAAGAAGCCAGCAAGCGGCCCCGGTGCTGTGGTGCGACCTCCAAAGGCACCAGAAGACTTTTCTCAAAACTGGAAGGCGCTGCAAGAG
Seq A exon
GTGAGGCTTGAGGGGGCCCGGGCGGAGCGCTGCGCAGCTCATTCCCGCAGAACGCGACGGAGGGAAAGACTTGGGTAGCCCCAAAAGACCTGTAAAGGCAGATTTGAATCGAAATCTTGTAAACAGCTTTTCACAAGAAAGGTGGCCTGTTGAGGGAGGTCTCGAACTTGTTTGCTTGAAAGAAATTGATGAAAGAATTATTTCAAGTACAAAAAAGCAAAGATAAACCCTTGTACCTTTTGCATAATGAACTAACTAGAATGGATTTTACAAAGAGAAATTTAGCTTAAAATCCCGAAACCAGGCCGGGCGCGGGGCCTCACGCCTGTGATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCCCCTGAGGTCAAGAGTTCAAGACCAGCCCGGCCAACATGGTGAAACCCCGTGTCTACTAAAAAAGTACAAAAAATATTAGCCGGGCGTGATGGCGCGCGCCGGTAGTCGCAGCTACTCGGGGAGCCTGAGGCAGAAGAATCGCTTGAACCCGGGAGGCAGAGGCAGTAGTAAGCCGAAATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAACAACAACAACGAAAGAACACACTGGTCTGTGTAGCAAGACAGGGAGAAAGAAGATTCCTGTGTAGAAGTGAAAAGCAGATAGCAGACATGTGATGGGGTTCTAGCGACACTTACGGTCTTGAAGTAAATACTAATTGAGCTCCTAAAAATGTGCACTCTGCCATGTGCTCTATGCCATGCGTGTTGCAATCCCCACAATAAGACTGTGAGGTGGACACTTCCATCATCGCTATTGTACAGATGAGGAAATAGGCTGGAAAAGTTTAAATAGATCATCTAAGATTGCGGCTGGGAACCAGGTGGCTGACTCTGGAGTCCATGCTTTTAAGGCTGTGTTGTACCTGCTGTCTCCCTAGTGACCTGCACTTCTGTAGAGGTTGCCTGCTCTCTCCTAGACACTCTTCCACGTGCGTCACTCATACATTCTTACCACATCCCTTGGAGCTCCCTTGGAGCTACCTCCTGTTAGGATCATAGCTCACTGCTGCCTGGGCTCCAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCCCACACGTGTAATCCCAGCACTTTGGGAGGCCCAGGCAGGAGGATCACTTGAGCTCAGGAGTTCAAGTCCAGCCTGGGCAACATGGTGAGATTCCATCTCTAAATAAAAGTAAAAAGTAGTTTTTTTAAAAAAGAAATGTGATCCCCAGTGGTGGAGATGGGGCCCATAGGAGGTATTGGGTCATGGGGGTAGATCCCTCATGAATGACTTGGTGCCCTCCCCTCAGTAACGAGTAAGTTCTCACTCTGCTGGTTCATTTGAGAGCTGGTTGTTTAAAAAGAGCCTAGCACCTTTTTTGCTTGCTCTCTCACCACGCAACACACCTGCTCCCCCTTCACCTTACACCATGATGGGAAGCTTCCTTCGGCCTCACCAGAAGCAGATGCTGGCACCATGCTTCTTGTACAACCTGCAAAACCATGAGCTACATAAACGTTTTTTCTTTATAAATTACCAAACACAGGTATTCCTTTATAGCAGTGCACAATGAACTAATACAGATGGGGTTTCACTTTGTTGCCCAGGCTGGTCTTCAACTCCTGACCTCAAGCAATCCTCCCACCTCAGCCTCCCCGAGCGCTTCTTGAACCTCCTAATACTCTGCACAGTATCTCAGTGCAGACATTCCTGTCTTAACACACAGGACCAGTCAAATTCCCGTGGGCAGCCCCAGGGTTCTGTGGGATTTCTTGAACACCAACTCTTCTTCCTTCTCCCAAGAAAGAAAAGCAAAATAAGTGAATGGAAGGGATGTGTGCTATAGGGAAACTTTGGAGTGTTTTCTAATTCATCCAAGAAAGTCAGCCCTTCAGTTCTTTACCTATCACAGAACAGGTAAGTAGCACCCGCCTCATCATCGCACTGTGGTGGCGCCCACTCCCACTGGGGATTTGAACACAGGGAGGAAGCTGGGCTCTAAGACTACAGGAGCCTCTGCTTGGGTGACAGCCAAGGTGTGTGGCTGCTAGCAGTTCTTCAGCCACTCCAGTTTGACAGAAGCTTTTCTTTTCATTTATGACACCCCCCACCTTCCTGAGATCTTCACAGCAGTAGCAAACCAGGGAATCTTGTAAAAAAAAAAAAAGCGATTTCTGTGTAGCAGGATGTTGGCCCAAGCTGTGAGGGAAGTTAACTCCAAAATTCTTTCTAGATAAGCTGAAAAGGGAAGTGGTCTGTGGTGTCCAGCCACTCAACAGGTACCCAAGGTGTAGAATGAGTTTGACATTTTGTATGCATGAAGGAGCAGGTGCAAAATGCATTATAATAAGATAAGCAAAGAAACAGCATTTCACCACAAGTGACCCATGAGAATGAAAAAGAGCTTTTTCCAAACCGTTTGAAAATGAATTTCAGTGATGCGGATGGGAATTGTATAGATGTGTTTGGTGTATATGTGTGTATATACATACACACGTAAGTTTTTTCAATCTGCTGTGTGTAATTTCCAAATTCAAATGCAGCATGTATTTTATTTTGGGTCCCAG
Seq C2 exon
TGGCTGCTGAAACAAAAATCTCAGGCCCCAGAAAAGCCTCTTGTCATCTCTCAGATGGGTTCCAAAAAGAAGCCCAAAATTATCCAGCAAAACAAAAAAGAGACCTCGCCTCAAGTGAAGGGAGAGGAGATGCCGGCAGGAAAAGACCAGGAGGCCAGCAGGGGCTCTGTTCCTTCAGGTTCCAAGATGGACAGGAGGGCGCCAGTACCTCGCACCAAGGCCAGTGGAACAGAGCACAATAAGAAAGGAACCAAGGAAAGGACAAATGGTGATATTGTTCCAGAACGAGGGGACATCGAGCATAAGAAGCGGAAAGCTAAGGAGGCAGCCCCAGCCCCACCCACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300:ENST00000371942:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=NA C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0092919=RNase_T=PU(20.2=40.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains