BtaINT0124444 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7408693-7409625:-
Coord C1 exon
chr23:7409335-7409625
Coord A exon
chr23:7408808-7409334
Coord C2 exon
chr23:7408693-7408807
Length
527 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
TTGGTCTGCTGTCCTGCCAGGTG
3' ss Score
9.84
Exon sequences
Seq C1 exon
CACATGAAGTGGCCGTCTGTCTCATCTCTGGACTCCGCCCTGGAAAGCACCCCAGCCCTGCAGAGTCCAGCTGACCCCAGCCACCTCTCTCCCCCAGCTTCCTCCCCTCGGCCTTCTCGAGGTCACCGCCGCTCAGCCTCCTGTGGTTCCCCGCTCAGTGGGGGTGCAGAAGGGGCCTCCAAGGGGCCTGGATGTGGGGGAGGGGCGCCTGGGCCAGGGACCTCTGATTGCCGAATCATCCGAGTCCAGATGGAGCTGGGGGAAGACGGCAGTGTCTATAAGAGCATCTTG
Seq A exon
GTGAGAGCTGTGGGTCAGGAGGTTGGGAGTGGAGATGATGTCTTAGGTGTCAACAGCCAAAGGGGAGGATGATTTTAGTTTTAATTGACCTTTGGTTTTAGCAGCCATGTTTTATTTTCAAAGTTACTTTGTATTAGCTGCTGCACTTTGAACTTTGGGTGTCCTCTGAGATTCTCAGAACCAACAGTGGTTTCCCCGGAGGGAACAGCCCGGCAACCATGTGGGCTGGCCCGCGGGGTACAGGGGGCCACCATGTTGGGTTTCCCTGGTAACTCAAAAGTTTGGACAAGGGCAGCCTTCTCTGTGAAGGCCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTAACAGGGTACAGTCCACGGGGTCGCAAAGAGTTGGACACGACTTGGCAACTGAGCAGCAGCAGCAGCTTTCTCTGGGTGGGCTCACTGGCTAGGGTTGGAATGATGCAAGGCCAAGGTCATCATTGCAATTAACTGCTCTTTTGGTCTGCTGTCCTGCCAG
Seq C2 exon
GTGACAAGTCAGGACAAGGCTCCAAGTGTCATCAGTCGTGTCCTTAAGAAAAATAATCGTGATTCTGCGGTAGCTTCGGAGTACGAGCTAGTGCAGCTGCTCCCAGGGGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827:ENSBTAT00000022385:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.845 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(23.9=21.6)
A:
NA
C2:
PF0078818=RA=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCATCTCTGGACTCCGC
R:
TACTCCGAAGCTACCGCAGAA
Band lengths:
357-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]