MmuINT0134168 @ mm9
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:34072685-34073922:+
Coord C1 exon
chr17:34072685-34072978
Coord A exon
chr17:34072979-34073807
Coord C2 exon
chr17:34073808-34073922
Length
829 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CATTTAATCTCTTCTGCAAGGTG
3' ss Score
6.11
Exon sequences
Seq C1 exon
CACATGAAGTGGCCATCAGTCTCATCTCTGGACTCTGCCCTGGAAAGCAGCCCCTCCTTGCACAGCCCTGCTGACCCTGGCCACCTCTCTCCTCCAGCCTCCTCCCCTAGGCCTTCCCGGGGTCACCGTCGCTCAGCCTCCTGTGGGTCTCCGTTGAGTGGAAACACAGGAGAAGGGACCTCTAGGAGTGCTGGATGTGGGGGCGGGGTATCTGGGCCAGGGTCCTCTGATTGCCGAATCATCCGAGTCCAGATGGAGCTGGGGGAGGATGGCAGCGTCTACAAGAGCATCCTG
Seq A exon
GTGAGGGAGCCTGGGGCGGGGCGGACCTTACCTTATTAGGCATTCGGCTTGGTTTGGGTAGCCAGGACTCAATTGTAGCTTCTGTGGAACTCAGGCAGTTGTTTGATGTTGGTGGCAACTGTGCATTAGTGAGCCACGATCTGAGTTTTCGGAGCTGTATGACGTGATCAGAGCCAGCAGTTTTCCCACAGGGATGCAGCTTTGCTGCGCTGGGAGCTACGTGGGCTGGCTGATGGGGCACTGGCAGCCACTATATTGGGTTTCTTGTTTATTTTATTGTATTCTGAGACTCGATTTCTCTGTATAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGACTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAGGTGCTGGGATTAAAGTCATTGGCCACTACCACCTGGCTTTTTGTTTTGTTTTTTGTTTTGTTTTTGGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCAGCAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACCGCCCGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTATTAAGACACAGGTGACCTGTTTTGGTTGGTGTTAAAAGGACGGGAAACAGGTCATCATGGTATATTTATTGTTCCCCCTGACTCCCGCCAAGACAGGGTTTCTTTGGGTAGCCCTGTACATCCTAGCACTCACTGTGTAGACCGGACCAGGCTGGCCTAGAACTCAGATCCCCTTGCCTCAGCCTCCTGAGTGCGCCACCACTGCCCGACTTGTTTATTGTTCATTTAATCTCTTCTGCAAG
Seq C2 exon
GTGACAAGCCAGGACAAAGCTCCAAGTGTTATTAGTCGTGTCCTTAAGAAAAACAATCGTGATTCTGCTGTGGCTTCAGAGTTCGAGCTGGTGCAGCTGCTACCTGGGGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-Rgl2:NM_009059:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(23.9=21.4)
A:
NA
C2:
PF0078818=RA=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTCTGGACTCTGCCCTG
R:
GAAGCCACAGCAGAATCACGA
Band lengths:
350-1179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: