RnoINT0126465 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5459221-5460293:-
Coord C1 exon
chr20:5460000-5460293
Coord A exon
chr20:5459336-5459999
Coord C2 exon
chr20:5459221-5459335
Length
664 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CATTTGGTCTCTTCGGCAAGGTG
3' ss Score
3.41
Exon sequences
Seq C1 exon
CACATGAAGTGGCCGTCTGTCTCATCTCTGGACTCTGCCCTGGAAAGCAGCCCCTCCCTGCACAGCCCTGCTGACCCTGGCCACCTCTCTCCTCCAGCCTCCTCCCCTAGGCCTTCTCGGGGTCACCGACGCTCAGCCTCCTGCGGGTCTCCGTTGAGTGGGGGCACAGGAGAGGGGGCCTCTAGGAGTGCTGGATGTGGGGGCGGGGTATCTGGGCCAGGGTCCTCTGATTGCCGAATCATCCGAGTCCAGATGGAGCTTGGGGAGGATGGCAGCGTCTACAAGAGCATCCTG
Seq A exon
GTGAGGGAGCCTGGGGCTGGGCAGGGTGGGAAGGACCTTACCTTGTTAGGCATTAGTCTTGGGTTTGGGTAGCCAGAAGGGCTCAACTGTAGTTTCATGGGACTCAGGCCGTTGTTTGATGCAACTGTGCATTAGCAGGCCCCACCCTGAGTTTCCAGGAGCTGTTGCTCTGGGAACCATGTGGGCCGGCTGATGGGGCACTGGCAGCCACTATATTGGGTTTCTTGTTTATTTATTTTTTTCCAAGACTGGATTTCTCTGTGCCGTCCTGGCTGTCCTGGAGCTCATTCTGTAGACCAGGCTGGCCTTGAACTCAGAGATCTGCCTGCCTCTGCCTCCCAATTGCTGGGATTTAAAGCACAGGCCACCACCGCCTGTGTCTTATTTATTTTAAACGATTAGACACAGGTGACCTTTTTTGGTTGGGCTAAAAGGATAGGAAACAGGTCATCATGGTATATTTATTGTTCCCCTCCCCCCCACTGACCCCCAAGACAGGGTCTCACTGTGTAGCTCTGGCTATCTTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGATTCTCCCTCCCTGCCTCTGCCTCCCAAGCGCTGAGATTTAAAGGCATGCGCCATGACTGCCCGGCTTTTTTATTGTTCATTTGGTCTCTTCGGCAAG
Seq C2 exon
GTGACAAGCCAGGACAAGGCCCCAAGTGTTATTAGCCGCGTCCTTAAGAAAAACAATCGTGATTCTGCTGTGGCTTCAGAGTTTGAGCTGGTGCAGCTGCTACCCGGGGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.282
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(23.9=21.4)
A:
NA
C2:
PF0078818=RA=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTCTGGACTCTGCCCTG
R:
GAAGCCACAGCAGAATCACGA
Band lengths:
350-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]