HsaINT1029213 @ hg38
Intron Retention
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33292430-33293306:-
Coord C1 exon
chr6:33293016-33293306
Coord A exon
chr6:33292545-33293015
Coord C2 exon
chr6:33292430-33292544
Length
471 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
TTGGTCTCCTGTTCTGCCAGGTG
3' ss Score
9.37
Exon sequences
Seq C1 exon
CACATGAAGTGGCCATCTGTCTCGTCACTAGACTCTGCCTTGGAAAGCAGTCCATCCCTGCACAGTCCAGCTGACCCCAGCCACCTCTCCCCACCAGCCTCCTCCCCTAGGCCTTCTCGAGGTCACCGCCGCTCAGCCTCCTGTGGCTCCCCGCTGAGTGGGGGTGCAGAAGAGGCCTCCGGGGGGACTGGATATGGGGGAGAGGGATCTGGGCCAGGGGCCTCTGATTGCCGTATCATCCGAGTCCAGATGGAGTTGGGGGAAGATGGCAGTGTCTATAAGAGCATTTTG
Seq A exon
GTGAGGGAGCCTTGGGATGGAGTTGGGGTGAAGGATGGTGTCTTGTTGGACTATAAATGTTGTCTGAGGTTTGGGCAGCCAAATGGAATTGAATGTAGTTTTAATTTTGACCTTTGGTTTTGGCAGTTATGTTTTATTTTTAATTTTATCTTCTAAACTCTAGTCTTCAATAGAAGCTGAAATTTGTTTTATTTTGATGGCTATTTTGCATTAGTTGCTACACCTTAAACTTTTGGTCGCCGTGTTAAAATTTCAGAATCAACAGCAGTTTCCCCACAGGGAAGCAGCTCTGTTTCACTGGGCACCATGTGGGCTGGCTTATGGGGTATAGGAAGCCACCATATTGGGTTTTCCTGTTCATTTTAAAGCCTTGGACACAAGTAACATTTTGTGGTTGGGTTCAGTGGCTGAGGGTAGAAGGATGGGAAATCATGGCTGATTGATTGCTCTTTTGGTCTCCTGTTCTGCCAG
Seq C2 exon
GTGACAAGCCAGGACAAGGCTCCAAGTGTCATCAGTCGTGTCCTTAAGAAAAACAATCGTGACTCTGCAGTGGCTTCAGAGTATGAGCTGGTACAGCTGCTACCAGGGGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441:ENST00000497454:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(23.9=21.6)
A:
NA
C2:
PF0078818=RA=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATCTGTCTCGTCACTA
R:
CCACTGCAGAGTCACGATTGT
Band lengths:
355-826
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains