DreINT0018076 @ danRer10
Intron Retention
Gene
ENSDARG00000022185 | RGL3 (1 of 2)
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr3:13861862-13865476:+
Coord C1 exon
chr3:13861862-13862149
Coord A exon
chr3:13862150-13865361
Coord C2 exon
chr3:13865362-13865476
Length
3212 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TTTTATGATATGTTGTGCAGTTG
3' ss Score
5.02
Exon sequences
Seq C1 exon
TCTCATTCTAGCTGCGGTCAGAGCTCGACTGAGGCTTTTCCATCATCTTACACTCCAGATTCCTCCATCATGTCCAGTTCGTCCTTCAGCTCTCAGCAGGACCTCAGTCTGAGCCAACCTTCTCCCTCATCATCTTCAGCTTCATCAGACCCTCAGCACGTCTCGTCTCATAAACGCTCGTTCTCCATGACCACCCTGCCTTTCTACAACCGACAGGTGGACGACTCCTGCATCATCAGGGTCAGCGTGGAGTTCTGCAACAATGGCAACATGTACAAGAGCATACTG
Seq A exon
GTAAGAACTTGAATTTTGCACACATTTAAATGGGTCCCGTGAAACTAAAACAAAAAATGTGGAGGCTTATTTCAGTTTCAGATTGTTTTGAGAATATCTATAAGCTAGTGTGCTTAAAAACAGTGACAAAATTTGCATTTAGAAACTATAAACTGATATAAAGATCCAAAGCTTGCAGTTTGTCACTTCCACGTCACCTCATACTTCAGTTTCTCATCAAATCCTCTGACCAATCAAGTGCTCTCTAGTATCTGACATGCTCCACCCCTTCAAGACGCTTCACATTTGTTTTCATTTGATGCGCTTGAGCTCAACCACTCTCACTGGCAAAGCTGTGATCAAACAAAACGCTATTGGCTGTTTTTCTAAATGGGGAGGAGCTACTGTATGTCCCACCCTCTCTTTGTTTTTCAATCGAGATTACATAAACATTGAATAAAAAATGCAGATTTTAAAGCACTTCACAAGTAAAACATGTTAATAATATTTGAAAAATTTAAGTTAATTATTTTGCTCACCCCATTCGCTGATTATTTAGCTTGTTTTAAGGAAAAGTTCCCTTAATTTCGACCTATTTCTCAAAACAAGACTAGATTTTTTACTTGTCTGCAAAATGCTTCTTGATTTAAGAAGTTTTAGATATTTGGAATTAAAAGTAAAAAAAACTCAGCATTTTTTCAATGTGGAAAAAGTGTGGTTTTAATCTAATGTATTCAAGGCTTGAAAAGTGCTTAGAGTTTGGATAAAGTGGTTGAATCTGCTTGAAAATGTAATTGTGTTGCTTCTGTAGTAAATTATCTTACCAAATAGCTAATAACTATTAAATATTTAAATAAAATCTAATTGTTTTTTTTCTCTTGCTGCTACGGTCCCTAACTTAAATATGACTCGTGACAGAAAGACAACGTAACATAAATAAACAACGGCCAAAGTGCTCCAGCTAAATTATTTCTTAACATAACATAACCAGCAAAACAATCCAAATTGACAAGAGATGGGGAGCCCAAAAACATAATAAAGAACAACCAAACAGAAGGCAGGTTGGAGCTCCCCACTCCAAACAAATATCAAAATGAAAGCATAAAGGAGAACACAACAATAAAGCCGTCAACAACTGTGGTGGCGTGGAGGAATGAGGGACCGGTAGAAGTCCGCTTGTGTTTCTTTTAAAGGCCTGACGCCACCAGATCAACCAATAGAAAACTGAAAAAGACAAACAAGATCAATTGGAAGTAATTATTAAGGGCAGGAGTGAACGCCACACGCAACACTTGCATATTATGAAATTTCTGGAGCATGTGCCTGTAGCGTGATCTGCCTGCCATCAAAATTCTTACTATATTGTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACTAGACTAGACTAGACTATACTATAACCTACTATACTATACTATAACCTACTATACTATACTATACTATACTAAACTATAACCTACTATACTATACTATACTATAACCTACTATACTATAACCTACTATACTATACTATACTATAACCTACTATACTATAACCTACTATACTATACTATACTATACTAAACTATAACCTACTATACTATACTATACTATAACCTACTATACTATAACCTACTATACTATACTATACTATAACCTACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATATGTCTGTAATCCCACCCATTTCAAAGCGATATTAAACTGCAGAGGAAAAGCAAAATGATGCAATGTAAAGCATGCTAAGCTAAGCTGTTTATTTTCATGCAGTGGAAAAAGGGGCCTTTGTTTTATAGCACATACAAAAAAAGCATAATACAGTGTTACGCCTTTAATTATCCAAATATTTTTGTAAAACTTTTAATACACTGTATTGTTATTAAAAAAGTTTTTTGTGTAAATTAATTTATTTAAAACTTTCATTCAGAGCTTTTAAATATTGATTTTGTTACTTAAGAAGTATAATTATTTAAATGATGATCTAGGAGACACATCTGCTGAAATCCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCATTCAAAACCAGTTCTTTAAGTAAACATACACACCCTCTTCCACAGAATATCCACAAAAAAAAAATTTATTAAACTAATTTTGAGAGGATCACGTGCTTAAGATTGCTTGCGGCTGGTCCTACATTTATTCAAGTCATGATTCACCAATCAGACGATTCCTAAGCCACTATAAATACCCTAAGTTTCATATAACAGCCATCTTCATTTTGAAGAATCCCTCCTTCCACCCCTACTCCTCCTCCTTTCCTAGATGGGTGGCACGGTGGCCCAGTGGTTAGCACTGTTGCCTCACAGCAAGAACGTCACTGGTTCTAGTCCTTACCAAGCCAGCCGACGTTTCTGTGCGGAGTTTACACATTCTCCCTGTGCTCACATGGGTTTTCAGCGGGTTCCCCGGTTTCCTCCCACTGTCCAAAAACATGCAACTTAAGCAGGGCACCTCATTTTACCGATCGCCCTCCTCAACCTCCCTCCTCCCCTGTCCACTGTTCACTTTAACTTTTTACTGCGACTCCCCAACCGTTTTTACTTTCATCCGTGACACGCCTACGCCATCCTATGCAACGCATCCCCCCACCCTCTCTCCCCGCTCCCCACTTTCAGTGCACGACACCTCTACATCCTCAGGTAACATGCCGGATCCGTCACCTTGATCAGTTCCAGGACCTCGCAATTCACAAATTAAGCACTAAACTTAAGTTAATTGACTAATCCAAATCGGCACCATAGACATGCTCCTATAAGTAGTTATCTCTTAAGAAGGGGAGTTCTCGAGATATACCTGAGCTCAAACTCCCCTCTTGCCTTGCAACCAAGAGGTAGCCCCGGGCTCGAGAATCTTATGAGCTCAGGGGAAACCCACGCTAACACATGCAAGAACATGCAAACTCTGGTCAGAAATGCCAACTGACCCAGCTGGAGCTCGAACCAACCTTCTTGCTGTGAGGCGATTGTGCTACCCACTGCGCCACCGTGCAGTCTATTCTTATTATCTTACTTTAATTCTTATTTCCTTCTTCTTTTTATTTTATTTTATGATATGTTGTGCAG
Seq C2 exon
TTGACCAGTCAGGATAAGACGGCACAGGTGATCCAGAGAGCGCTGCAAAAACACAACCTGGAGGATGTCGATGAGCAGGATTTCACCCTCATACAAATTCTGGCCCAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022185:ENSDART00000001755:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(23.6=21.9)
A:
NA
C2:
PF0078818=RA=FE(42.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]