RnoINT0123935 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7126409-7127876:+
Coord C1 exon
chr3:7126409-7126651
Coord A exon
chr3:7126652-7127761
Coord C2 exon
chr3:7127762-7127876
Length
1110 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGCTCCCCATTCTTATTCAGGTG
3' ss Score
9.57
Exon sequences
Seq C1 exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCTGGCATCAGCTCGGCCTCCAGCAGCACCTCCTCTTCGTCAGCCTCTACCACACCGGTGTCTACCACACGCACCCACAAGCGCTCTGTCTCAGGGGTCTGCAGCTACAGCTCCTCACTGCCACTCTACAACCAGCAGGTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq A exon
GTGAGTGGTAGCCGGTGTCCGTATGGGGCCCGGCTTGGCTGGGCAGCTGACATGCACAGATACCCAGGCCCCCAGGGAACTGTGGCCCACAGCCCATCAGGGCCGAGGCAGTGGCAGGGAGTAAGAGTCAGTCAGTCAGGACCCCACTGACCTGTAAGGCCCTTGACTTTCTGTTGGAGGCTGAAACAGAGGCTGGTGGTGACTTGGTGTGCCGTGGGCATAGGCAGCTGACCAAGGCAGAGGCCGACTGCTTAGGAGGCCGTTGCAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCGACTGCTCTTGCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAAATGAATACATTTAAAAAAAAAAAAAAAAAAAAGGAGGGGTTGGGGATTTAGCTCAGTGGTAAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGGCCGTTGCAGTCCAGGCTCAGGAACGCAGGGGCCAAAGCAGGCTGATGGCCATGGGCAGAGTCACAGGCGTCAAGGTGTGGATGTTGTTTGAACGTGGAACCAGTGGGATCCACTAAGATTATGGATGGGCACACAGGGAGAACCTTTCCCACCTGCCAGGGCTTGGACTGCAGACGGCTGCTGCACCGGGTCAGGTGCCCTACGTACTCCACCCCAATGGAGCCTTGGCCCCCCTGTGCCAGGAGCTGGGAGGGTGCTAAGTCTCATTCACCTGGGAGAGGCCATGACCGAGCCCCATGAGCTAGCCTGTGCTACCACCATCACAGCCTCAGGGCAGGGCAAGACATAGGAGGCGGTGAGCATTGGTGAGCATTGGTTGCTTCCTCCTTACCATGGAGTGGAAACTATTGCTTCTCCTGGATCAACAGATCCTCTCGTTTTCAGGGGCACACAGCTCCCCGAGGCTGTGTGGGAGTTGGTGGCAGGCTGTTTTAGGCCACTGTACCCTGTCCTGATAGCCTGCTCCCCATTCTTATTCAG
Seq C2 exon
GTGACCAGCCAGGATAAGGCTCCGACTGTCATCCGGAAAGCCATGGACAAACACAACCTAGATGAGGACGAGCCCGAGGACTATGAGCTGCTGCAGATCATCTCAGAGGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.282
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=24.7)
A:
NA
C2:
PF0078818=RA=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGCCTCCCAGTCGTC
R:
CTGAGATGATCTGCAGCAGCT
Band lengths:
343-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]