MmuINT0131348 @ mm9
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28404810-28406083:+
Coord C1 exon
chr2:28404810-28405052
Coord A exon
chr2:28405053-28405968
Coord C2 exon
chr2:28405969-28406083
Length
916 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGCTCCCCATCCCAATTCAGGTG
3' ss Score
8.9
Exon sequences
Seq C1 exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCTGGCATCAGCTCCGCCTCCAGCAGCACCTCCTCTTCGTCAGCCTCCACCACGCCCGTGTCTACCACGCGCACCCACAAGCGCTCCGTCTCAGGGGTCTGCAGCTACAGCTCCTCACTGCCTCTCTACAACCAGCAGGTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq A exon
GTGAGTGAGCTGCAGCCCATGTGCCTGTGGGGCCTGACTTGGCTAGACGGCAGACGTGCACAGATACCTGCCTGTTGTCGGTATTTGAATCATCTTAAACTATCTTAAAAAAGAATAGAGAGAAATACCTGGAGACCTGGGTCAGCACTCTGGCCCATGAGGAGGGACAGGAGCACTATGCCCACCCACCCCAGGAAATGGGCCAGCCTGTAGGGCATCAGTCCCAAGGCAACAGGACAGGGATTAGGGGAGAGTCATTCAGGACCCGTTGACCTGTAAGGCCCTTGACTTTCTCTTGGGGGTTGAAACAGAAGCCAGTGGTGACTGGGTGTGTCCATGGGGATAGGCTGCTGACCAAGATGGAGGCAGACTGCTTAGGAGCTTGTTGTAGTCCAAGCTCAGGAAGGCGGGGACCAAAGCAGGCTGGTAGCCATGGCCAGACTCAGTAGTGCCAAGGTGTGGATGTTGTTTGAACATGGAGCCAATGGGATGGGATCTACTCAGACTATGGATGGGCAGTACACGGAGGGCCTTTCCCACCTGCCAGGGCTTAAGCTGCAGACGGCCGCTACACTGGGTCAGGTACCCTACCATACCCACCCCAGTAGGGCCTCGGCCCCTTGGTGCCCCTCAGTGCCAGGAGCCGGAATGGTGCTTAGTCATGTTCACCTGGGTGACCCCATGTCTGAACCCTCTGAGCTAGTAGCCTGTGCTGCCTGCCACCGCAGCCTTAGGGCAGGGCTGGGCATGGGAGGCCAGTGAGCATCAGCTGCTTCCTCCTTATCATCCGAGTGGAAATTATTGGTTCCTCTTGCTTCAGGGGCACATAGCTCCCCAAGACCATGTGGAAGTTGGTGGCAAGCTGTTGTAGGACACTGTGCCCTGTCCTGATAGCCTGCTCCCCATCCCAATTCAG
Seq C2 exon
GTGACCAGCCAGGATAAGGCTCCGACTGTCATCCGAAAAGCCATGGACAAACACAACCTAGATGAGGACGAGCCGGAGGATTATGAGCTGGTGCAGATCATCTCAGAGGATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-Ralgds:NM_001145835:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=NA C2=0.397
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=24.7)
A:
NA
C2:
PF0078818=RA=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGCCTCCCAGTCGTC
R:
TGAGATGATCTGCACCAGCTC
Band lengths:
342-1258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: