BtaINT0124447 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7412756-7413275:-
Coord C1 exon
chr23:7413192-7413275
Coord A exon
chr23:7412935-7413191
Coord C2 exon
chr23:7412756-7412934
Length
257 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
TGGTGCTCTGTCTCCCCCAGGCC
3' ss Score
11.15
Exon sequences
Seq C1 exon
GCCCCTGTGTCTGTCTGGGAGGAGGAGGAGGATGGTGCTACCTTTACAGTCACAAGTCGCCAGTATCAGCCTCTTGATTCCTTG
Seq A exon
GTGAGATTATAACTTTGATATCTCACCTCTGACCTACCACCTCCCAGTTCCCCTGCCTCCCACTGACTTTCTGGCCAGAATACTAGGTTGGAGGTTTGGAGACTGGACTCAGCTGTGTGACTTAGTTCGAGTCATTTGCTCTCTCTGAATCCTAATACAATGAGGCTGAATCATCTCCTAGGTCTGGGATTTCTCCCAGAGATCTAGCGAGGGAGAGTTGAAAAAAGGGTCAGTGGCTGGTGCTCTGTCTCCCCCAG
Seq C2 exon
GCCCCAAGGCCTCCTCTGCGTTCCTCCCGGAAACTCCGAGCTGGCACCCTGGAGGCCCTGGTCAGACACCTGCTGGACGCCCGTACATCAGGGGCTGACATGACCTTCACAGCAGCCTTCTTGGCCACTCACCGGGCCTTCACCTCCACGCCTGCCCTGCTAGGGCTTATGGTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827:ENSBTAT00000022385:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=NA C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(50.0=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTCTGTCTGGGAGGAG
R:
CTGTCAACCATAAGCCCTAGCA
Band lengths:
260-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]