MmuINT0134171 @ mm10
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33931726-33932218:+
Coord C1 exon
chr17:33931726-33931809
Coord A exon
chr17:33931810-33932039
Coord C2 exon
chr17:33932040-33932218
Length
230 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
ACACCCTCCATGTTCTCCAGGCT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCTTCTGTGTCAGTCTGGGACGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTACAGGCCTCTTGACCCCTTG
Seq A exon
GTGAGATCACGACTTTGAGGTCTTGCCTCTCGGTTTTTAATTTAATATTTATTTATTTATTTTCCGGAACATTAGGTTGAAGAAGTTCTGGTAGTGTGAAGGTAGTTCTGTGTTGTGTGATTTAAGCCATTTCTGAACCGGGGCAGAAATAAGCTAGATCTGGATTATCCCAGATGTCTAGCAGTCAGATTGAGGAGGCCCGTCGGTGAGACACCCTCCATGTTCTCCAG
Seq C2 exon
GCTCCCTTGCCTCCACCTCGCTCCTCCCGACGGCTCCGCGCTGGCACTCTGGAGGCCCTGGTCAGACACCTCTTGGATGCCAGGACAGCAGGGGCTGACATGATGTTCACTCCGGCCTTGCTGGCCACCCACCGGGCCTTCACCTCCACTCCTGCCCTGTTTGGGCTTGTGGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354:ENSMUST00000047503:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(50.0=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTCAGTCTGGGACGAG
R:
CTGTCAGCCACAAGCCCAAA
Band lengths:
260-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types