RnoINT0126468 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5464020-5464519:-
Coord C1 exon
chr20:5464436-5464519
Coord A exon
chr20:5464199-5464435
Coord C2 exon
chr20:5464020-5464198
Length
237 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
ACACCCTCCATGTTCTCCAGGCC
3' ss Score
8.4
Exon sequences
Seq C1 exon
GCTTCTGTGTCAATCTGGGATGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTATAGGCCTCTTGATCCCTCG
Seq A exon
GTGAGATCATAAGCTTTGCGGTCCTGACATTCAGTTTTTAATTTGATTTTTTTTTTTTTTTTTTTGGCCAGAGCACTAGATTGGAGGTCTGGTAGCACTCTTGTGTGATTTAAGCCATGTCTGAACTCTGAACTGTGGAGAAAAAAAAAAAAAAAAAACTAGATCTGGACTATCCTAGATGATGTTTAGCAGTAAGATTGAGGAGACCATCAGTGAGACACCCTCCATGTTCTCCAG
Seq C2 exon
GCCCCCTTGCCTCCGCCTCGCTCCTCCCGAAGGCTCCGTGCTGGTACTCTGGAGGCCCTGGTCAGACACCTCTTGGATGCCAGGACATCAGGGGCTGACATGACGTTCACTCCAGCCTTGCTGGCCACCCACCGGGCCTTCACCTCCACTCCTGCCCTGTTTGGGCTTGTGGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=0.331
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(50.0=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTCAATCTGGGATGAGGA
R:
CTGTCAGCCACAAGCCCAAA
Band lengths:
260-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]