BtaINT0124455 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17013806-17014053:-
Coord C1 exon
chr7:17014000-17014053
Coord A exon
chr7:17013893-17013999
Coord C2 exon
chr7:17013806-17013892
Length
107 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TGGAGCTCTGGGGGCCACAGAAA
3' ss Score
1.06
Exon sequences
Seq C1 exon
GAGGCAACTCAAGGGCCCCAAGAAGGGGATGCCCCCACAGGAAGCCCGTCTTCG
Seq A exon
GTGAGTGATGTGGTTTGAAATGAGAGACAAGTGGGATGCTGGGGCAGGGGGTGGAGCCTGATGGGGTCACTGATGCCTAAGGGTGACTGGAGCTCTGGGGGCCACAG
Seq C2 exon
AAACTGCCCCCAGGCCCCATCCCCTACCTTGGCACCTTTCTCACGGACCTGGTAATGCTGGATACCGCCCTGCCGGATATGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.0=100)
A:
NA
C2:
PF0061714=RasGEF=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTCAAGGGCCCCAAG
R:
CTTCAGCATATCCGGCAGGG
Band lengths:
138-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]