RnoINT0126489 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22988351-22989052:-
Coord C1 exon
chr8:22988996-22989052
Coord A exon
chr8:22988890-22988995
Coord C2 exon
chr8:22988351-22988889
Length
106 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
3' ss Seq
TGAAGCTTTTGGGATTGCAGAAA
3' ss Score
3.1
Exon sequences
Seq C1 exon
GAAGAGACCACTGAGGGACCCCAAGGTGATGACTGCTCCCCAGGAAGTCTGCCGTCA
Seq A exon
GTAAGCAATATGGTTCAGGATGGGGACGGGGGTGGAAGGGGGACTCTTGGGGAGTTGGCATGGGGTCAGTGATGCCCATGAGTAACTGAAGCTTTTGGGATTGCAG
Seq C2 exon
AAACTGCCCCCAGGTCCTGTCCCCTACCTTGGCACCTTTCTCACAGACTTGGTTATGCTGGATACAGCCTTACCAGATATGTTGAAGGTTTGACCTCCTACCCTTGACTCTTGACCCCTGCTCTATTACCCACAGCCCAACAGTCCTTCATTCATTCAGCTTTGATCTAGCTTGAACTCATACTTCCCTCCACCCCCACATACCATAGAGGCTTGTGCCATCATAGCTCTTGAACTTGACTTTTGACCCTTGACCCTTGACCCTGGATGCTATAGCTCAAGCCAGCTTTGCCCCCTCAGGGAAATCTCATCAACTTTGAAAAGAGGAGGAAGGTAAGTGGGTGGGTAGTGGGGGTTGGTGAGATGCCCCACGGGTGGCAGGCAGGTTGTGACAGGTTCTCAGGAGACACCCCCTCAGGAGTGGGAGATCCTGGCCCGAATCCAGCAGCTACAGCATCGATGCCAGCACTACAGCCTGAGCCCCCGCCCGCCAATCCTGGCTGCCCTTCGTGCCCAGCGCCAGCTCAGCGAGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(9.0=100)
A:
NA
C2:
PF0061714=RasGEF=PD(14.4=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGACTGCTCCCCAGGAAG
R:
GCCTCTATGGTATGTGGGGGT
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]