BtaINT0124460 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17011830-17012079:-
Coord C1 exon
chr7:17012011-17012079
Coord A exon
chr7:17011927-17012010
Coord C2 exon
chr7:17011830-17011926
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGATTCTGTGTCTCCCCCAGTCT
3' ss Score
7.87
Exon sequences
Seq C1 exon
GAAGCTGTCCCGGGAGAGAGTTTCATCCCCTGGTGGAAGTCCTGGGGATCCCTCATCCTCCACCTCAAG
Seq A exon
GTGAGCATCCCATCTGATGAAGGAACTGGAGAGGGGTCAGAGTTCAGGGCAGCCACCCCACTTCAGATTCTGTGTCTCCCCCAG
Seq C2 exon
TCTGTCCCCAGCATCCCCTCCATCCAGTCCTAGAACCAAGGACCCTCCTACAGGCAGTCCTCCAGCCTCTCCAGGGCCCCAGAGCCCCAGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGGAGAGAGTTTCATCC
R:
CTTGGTGCTGGGGCTCTG
Band lengths:
159-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]