RnoINT0126478 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22987127-22987373:-
Coord C1 exon
chr8:22987305-22987373
Coord A exon
chr8:22987224-22987304
Coord C2 exon
chr8:22987127-22987223
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTGAAGTCTGTTCTCACCAGTGT
3' ss Score
4.36
Exon sequences
Seq C1 exon
GAAGCTGTCCCGGGAGAAGAACCAGTCTCCTGGCGGGAGTCCCGGGGATCCACCCTCACCTACCTCCAG
Seq A exon
GTCAGTATCCAAGGCAGAAGGGACTAGAGTCACCAGGACAAAAGAGGCCAGGCCTCTCATTCTGAAGTCTGTTCTCACCAG
Seq C2 exon
TGTGTCTCCAGGGTCTCCCCCAGCCAGTCCTAGAAGCCAAGACCCTCCTCCTGGCAGTCCTCCAGCTTCACCAGGGCCTCAGAGCCCCAGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGTCCCGGGAGAAGAA
R:
CTTGGTGCTGGGGCTCTGAG
Band lengths:
166-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]