HsaINT0139887 @ hg38
Intron Retention
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr19:11399855-11400108:-
Coord C1 exon
chr19:11400040-11400108
Coord A exon
chr19:11399952-11400039
Coord C2 exon
chr19:11399855-11399951
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCCTCTGCATCTCCCCCAGTGT
3' ss Score
6.36
Exon sequences
Seq C1 exon
GAAGCTTGCCCGAGAGAAAAGCTCATCACCTAGTGGGAGTCCCGGGGACCCCTCATCCCCCACCTCCAG
Seq A exon
GTGAGCATTCTGCTTGGTGATGGGACTGGGGATCATGGGATCAGGAGTCAGCACAGCCACCCCACCTCAGCCTCTGCATCTCCCCCAG
Seq C2 exon
TGTGTCCCCAGGGTCACCCCCCTCAAGTCCTAGAAGCAGAGATGCTCCTGCTGGCAGTCCCCCGGCCTCTCCAGGGCCCCAGGGCCCCAGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517:ENST00000380456:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCCGAGAGAAAAGCTCA
R:
CTGCCAGCAGGAGCATCTCT
Band lengths:
122-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development