BtaINT0124461 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17010810-17011926:-
Coord C1 exon
chr7:17011830-17011926
Coord A exon
chr7:17010963-17011829
Coord C2 exon
chr7:17010810-17010962
Length
867 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CCCACCCCCGCTGTCCACAGCTG
3' ss Score
10.17
Exon sequences
Seq C1 exon
TCTGTCCCCAGCATCCCCTCCATCCAGTCCTAGAACCAAGGACCCTCCTACAGGCAGTCCTCCAGCCTCTCCAGGGCCCCAGAGCCCCAGCACCAAG
Seq A exon
GTACCAAGACTATGTGTACATGTGGGACTGCGGGCACCCAGGGCTGTTTTGTGTGTGTGTGTGTGCGTGCGCACACAGGATTTCACAGCCAAGTATGTGCACAGGAGACCGTGAACACAGTTGACTCAGCATTCTGAGCATATGTCTGGAAAACTGCATGCATCTCTATGGACCCACTTAAGGGACTGTCCGTCACTTACACTCAGATCTGGACAAGAGCTTCCACTTACCCACAAGGCACTCTGGGTGGCAGTCACTACTTTTGTAAGGATATGTGTTTTCCCAGGAAAGGGCTTCCCCGGTGGCTCAGCAGTAAAGAATCCACTTGCGATGCAGGAAACACATGAGACATATGTTCAATTCCTGGGTCAGGAAGATCCCCTGGAGAAAGGCATGGCGACCCACTCCAGTCTTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTATGGTCCATAGGGTCGCAAAGAGTTGGACTCAATTTAGCACAAACACAGGAATTTGCGTACCTGGAGGGGAAATGCTGGCGTGAATAGCCATAGTATCCATGGGCCTGTGCAGGGCTCCTGGTGTTCATGGGCTTGTGCCCGTCCAACAATTGTGAGCAAACGTGGGCACTCGCTGCTCTCAGATTACATGGGGTTTCTTGTGTGTGAACACGAGTCATGTGTGAATTCCTGTAACAGTATGAAGGTCTGTATGTGATGGGATGGCATAGATGCGGGCATCTATGGGATGGGATGGCATAGATACCCTAATTGCACATCCCCAGGCTCAGGGTATGCAGGAAGATGTGTTGAATACAATGAGGGAGGGGCCTCACTCTCTCCCCGCTCAGCCCCCACCCCCGCTGTCCACAG
Seq C2 exon
CTGCCCCTGAGCCCGGACCTGCCAGGCCCCTGGTCCCTGGCCCTACCCTTGAGTGGCCCTCGTATCTCCCTCCCTGGGCAGCAGGGCTCAGAGGCCCGCGTCATCCGGGTCAGCATCGACAATGACCATGGCAATCTGTATCGGAGCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078818=RA=PU(22.7=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCCAGCATCCCCTC
R:
GATGCTCCGATACAGATTGCCA
Band lengths:
246-1113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]