MmuINT0134185 @ mm10
Intron Retention
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21974388-21975707:-
Coord C1 exon
chr9:21975608-21975707
Coord A exon
chr9:21974541-21975607
Coord C2 exon
chr9:21974388-21974540
Length
1067 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CCACCCCACACTGCCTACAGCTC
3' ss Score
6.94
Exon sequences
Seq C1 exon
TGTGTCTCCAGGTTCACCCCCATCCAGCCCTAGAAACCGAGAGCCTCCTCCTCCGGGCAGTCCTCCAGCCTCCCCAGGGCCTCAGAGCCCCAGCACCAAG
Seq A exon
GTACCAGGACAATCTGTGATTTTATAAAGGACTGGGGCACCCAAGGCTCAGAGTGTGTGCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTAGAACTGCAGGTATGTATCACAGAGTCTGGCTGCTCTCTGTTGCTTTATCTGGGAGACTGGACATCTCCACCGCCAATGAGCAATCACCTACCATTCTGGCTTCTCCTCAGTCAGTCTGACCTGGATCCCCACCTATCTGCAGGCACATCAGGAGTGATCACTACAACTTTTTTCCCTAATGAGCAGTACTCCAGCTAAATGTATGTAGTACAGGCCTGTAATCCCAGTAATTGGGAGTTGGAGGTAAGAGGATCATGAGTTCAAAGCCATCTTTGGCTACATTATGATTTTAAGCTCCATGACATCATGTCTCAACAACAACACAAACAAACAAAAAGTACTGGCATTGAATCTAGGACCTCATAAAGGCATTATCACTGAGCCGTGCCGTAGGCCCTCACTGTCTTGAGACAGGGTCACATTAAGTTGCCCAGGCTAGCCTTGAACTTCTACCTGAGCCTCTCAAATAGCTGGGATGACAGTTCTGTGACAGCAGCTCCAACTGTCACTTCCTCAAAGACATACAAGTCCCTAGGCTTGCCTGCCTGCACACATGACAGGGAAATACTCCAAACATCCACAGGATGACGCATGTGGCTGCTCGGCTGCTCTCTGATGGGGTACTGTAGGTTTCCAACTGTGAGCACACCTGTGTATGCACACTGTACACTCTCTGCTTAGGATCCTGCTGTGGCCTTTGCTTTGTGGGTATATGGGCCCTGTGTCCGTTTCTTTCTGTGACAGAGAACTGTGGTTTGTGTGTGATGGCATGACATGTACCCAGCCTTGTGCGTGTACCCTAACTGCGTGGTGCCCAGGCTCTCATGTGTGAGGACTCTGTGAGTGCTGTGTGTTCATCAGTTGATTGTATACAGTGGGGTGGGAGCCTCGTGCTTCTCAGCACACAGCTGAGCAAGGCTGCAGCCTCCGCCACCCCACACTGCCTACAG
Seq C2 exon
CTCTCCCTGACCATGGACCCACCAGGGCCCTGGCCCGTGACCTTGACTCCGAGCAGCTCCCGAGTTCCCCTCCTCGGGCAGCAGACGTCAGAGGCCCGCGTCATCAGAGTCAGCATCAACAATAACCACGGGAACCTGTATCGGAGCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146:ENSMUST00000045726:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078818=RA=PU(22.7=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGGTTCACCCCCATC
R:
GATGCTCCGATACAGGTTCCC
Band lengths:
246-1313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types