HsaINT1029223 @ hg38
Intron Retention
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr19:11397445-11399951:-
Coord C1 exon
chr19:11399855-11399951
Coord A exon
chr19:11397598-11399854
Coord C2 exon
chr19:11397445-11397597
Length
2257 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CCACCCCTTACTGCCTGCAGCTG
3' ss Score
7.62
Exon sequences
Seq C1 exon
TGTGTCCCCAGGGTCACCCCCCTCAAGTCCTAGAAGCAGAGATGCTCCTGCTGGCAGTCCCCCGGCCTCTCCAGGGCCCCAGGGCCCCAGCACCAAG
Seq A exon
GTACCAAGACGGCTTGTGTGTGCATGCGGGCCTGCGGGCACCCAGGCTCTGTGTGTGTGCACGTGTGTGTGCATGCACATGTGTACACACAGGATTGTGGGGCCAGGAGTGTATACAGGAGGCACACTGAGCGCCCGGGGTATCCATCCAGGGGATTGCATGCATCTGCACGGCCCTGTTTGGGTGATCACTCATAAATCCGACTCGTGCTCAGATTTGGACCTGTGTAACTGCTTGCCCATGGGTCATCTAGGGTGCAATCACATCACACCCCTTTTTATTTGAAACAGGGTCTTCTTGCTCTGTCACCCAGGCTGAAGTGCAGCGGTGCAATCTCAGCTCACCGCAACTTCCACCCCTCCCCCAGGCTCAAGCAATCCTTCCACCTCAGCCTCCCAAGTAGCTAGGACCACAGGTGTGCACCACCATGCCCTGCTATTTTTTTTATTTAGTAGAGATGAGGTTTCGCCATGTTGCCCAGGTGGGTTTCGAACTCCTGAGCTCAAACAATGCACTCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCCAGCCTACACTTTTTTGAGGACATGTATGTCCCTAAGAATCTGCATACCATGGCAGACACGGTGGCTATTGCCTGTGATCCCGGCACTTTGGGAAGCCAAAGTGGGAGGATTGCTTGAGGCCGGGAGTTCAAGACCAGCCTGGGCAACATAGTGAGACCCTATTTCTATTAAAAGTCAAAAAAATTAGCTGGGTGTAGTCCCAGCTACTCAGCAGGCTGAGGTGGAAGGATCGCTTGAGTTTGAGGCTGCAGTGAGCTACGATCATGCCACGGCACTCTAGCCTGCATGATAGAGCGAGATCCTGTTTATGAAGAAAAAGAGACTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCTGGCCAACGTGGTGAAACCCTGTCTCTACTGAAAATAGAAAAATTAGCTGGGTATGGTCGCGCACACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGACGGAGGTTGCAGTGAGCTGAGATGGTGCCACTGCACTCCATCCAGCCTGGTGACAGAGCGAGGCTCCCTCTAAAAGAAAAACAAAAAAAGAAAAGGAAATGAAGGAAATGAAGGCTGGGCATGGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCCAGTGGATCACTTGAGGCCAGGAATTTGAGACCAGCCTAGCCAACATGGTGAAACCCCGTCTCTACTAAAAATAAAAACATTAGCTGGGCATAGTGGCACAGGCCTGTAATCCCAGCTACTTGGGAGGGTGAGGCATGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATGGCACCACTGCATTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAGAAAAGAAAAAGAAAAGAATCTGTGTACCAGAAGAGGAAATGTGGGCCTGAGTATTCATGAGATCATGTGTGGGGTTGTTCATTGGCATGGGCTGTGGGTGTATAACCGCTGTCAGCATATGTATGTACACAGGATTTCTTGTGTATGAGCATGGGTTGTGTGTATATGGACACTGTTCATGTCTGTTTCTATAACAGGTAACCAAAGTCTGTATATGGTAGGGTGGTGTATATGCAGGCTTGTGAATGTACTCCAGTTGCATGTCCCAGGCTCTGCATGTGTAGGGGGTAGTAGTATGTTTTCTTGAGATTTTATTTTATTTTATTATTTATTTATTTATTTTTGAGATGGAGTCTTGCTCTGTCACGCAGGCTGGAGTGCAGTAGCGTGATCTTGGCTCACTGCAACCTCTGCCTCTCAAGTTCAAGTGATTCTCCTGCCTCGGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCAGGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCACGTTGGCCAGGCTGGTCTTGAACTCCCGACCTCAAGTGATCCGCCCACCTCGGCCTCCCAAAATGCTGAGATTACAGGCATGAGCCACTGCGCCCAGCCAATGTTTTCTTGAGATTTTAAATGTGGGGCTATTGAATGCACCAGTGGTGGCTGGGGTGTTCGTGCTTTTCTAGCCCTCAGCATCTGCAGATGGGCCAAGCTGTAGCCTCCACCCCTTACTGCCTGCAG
Seq C2 exon
CTGCCCCTGAGCCTGGACCTGCCCAGCCCCCGGCCCTTCGCTTTGCCTCTGGGCAGCCCTCGAATCCCCCTCCCGGCGCAGCAGAGCTCGGAGGCCCGTGTCATCCGCGTCAGCATCGACAATGACCACGGGAACCTGTATCGAAGCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517:ENST00000380456:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.784
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078818=RA=PU(22.7=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains