RnoINT0126479 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22985931-22987223:-
Coord C1 exon
chr8:22987127-22987223
Coord A exon
chr8:22986084-22987126
Coord C2 exon
chr8:22985931-22986083
Length
1043 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
CTGTTCCACACTGTCTACAGCTG
3' ss Score
7.9
Exon sequences
Seq C1 exon
TGTGTCTCCAGGGTCTCCCCCAGCCAGTCCTAGAAGCCAAGACCCTCCTCCTGGCAGTCCTCCAGCTTCACCAGGGCCTCAGAGCCCCAGCACCAAG
Seq A exon
GTACGACAATAATCTGTGAATGTGTTAAGGACTGGGGCACCCAAGGCTCAGAATGTGTGTATGTGTGCGTGCATGTGTGTGTGGGTGTGTGTGGGAGTATGTGCACACATGTGTGGGTGCACGTGTGCATGCATGTATAGCACTGAAGGTATGTATCCCAGAGACTGACTGTTCTCTGCTGTTTTATCTGAGAGCATCTCAGTGGCCAATGAGCAATCACCTACCTACCATTCTGGCTTCTCCTCAATCTGACTTGGATTCTCCCCTATCTGTAGGCACATCAGGTACGATCCCTACCACCTCTATTTCCTAATAAGTAGTACTCCAGCTAAATGTAGCACAGGCCTGTAATCTCAGTAGTTGGGATGGAGATGAGAGGATCAGGTGTTCAAAGCCATCCTTGGCTACATTATAAGGTTATGCTCTGTGACATCCCAACTCAACAACACAAGCAAACAAAAAATACTGGCATTCAATCGAGGACCTCATAAGGGCGTTACCACTGAGCCGTACCCCAGGTCCTCACTGTCTTGAGACAGGGTCATACCAAGTTGCCCAGGCTAGCCTTGAGTTTGTGATCCTCCTACCTCAGCCTCTCCAATAGCTGGGATGACAGTTCTGTGCCAGCAGCTCCAACTGACAGTTCTTCAAAGACAAGCCCCTAGATTTGCCTGTCCACACGCACGACAGGGAAGTACTCCAAGCACCCACAGGACTGTGCGCGAGGGTGCTCAGCTGCTCTCTGATGGGGTATGGTAGGTTTCCAACTGTGAGCACAGCTATGTATGCACACTGTGAACTTGGCTTTGTGTGGATGTGGGATGTGTGTCCGTTTGTTTCTGTGACAGAGAACTGTAGTTTGTGTGTTATGGGATGACGTGTACTCAGCCGTGTGCGTGTACCCTAATGTGTGGTCCCCGCTCCTGTGTGTGAGGACTCTGGGTGTGTTCATCAGTTGATGTGTACAGTGGGGTGGGAACCTCGTGGTTCTCACCACACAGCTGAGCAAGGCTGCAGCCTCTGCTGTTCCACACTGTCTACAG
Seq C2 exon
CTGTCCCTGAGCATGGAGCCACCAGGGCCCTGGCCCATGACCTTGACCCCGAGCAGCTCTCGAACTCCCCTCCTTGGGCAGCAGACTTCAGAGGCCCGCGTCATCCGCGTCAGCATCAACAATAACCATGGGAATCTCTATCGGAGCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.843
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078818=RA=PU(22.7=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTCCAGGGTCTCCC
R:
AGATGCTCCGATAGAGATTCCCA
Band lengths:
248-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]