MmuEX0039592 @ mm10
Exon Skipping
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21974022-21975707:-
Coord C1 exon
chr9:21975608-21975707
Coord A exon
chr9:21974388-21974540
Coord C2 exon
chr9:21974022-21974136
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCACCCCACACTGCCTACAGCTC
3' ss Score
6.94
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
TGTGTCTCCAGGTTCACCCCCATCCAGCCCTAGAAACCGAGAGCCTCCTCCTCCGGGCAGTCCTCCAGCCTCCCCAGGGCCTCAGAGCCCCAGCACCAAG
Seq A exon
CTCTCCCTGACCATGGACCCACCAGGGCCCTGGCCCGTGACCTTGACTCCGAGCAGCTCCCGAGTTCCCCTCCTCGGGCAGCAGACGTCAGAGGCCCGCGTCATCAGAGTCAGCATCAACAATAACCACGGGAACCTGTATCGGAGCATCTTG
Seq C2 exon
CTTACTTGTCAGGACAAAGCCCCCAGCGTGGTGCAAAGAGCCCTGGAGAAGCACAATGTGCCCCAGCCCTGGGCCCGTGACTACCAGCTCTTCCAGGTCCTGCCTGGGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=0.824 C2=0.359
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(22.7=39.2)
C2:
PF0078818=RA=FE(43.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGGTTCACCCCCATC
R:
CTCTGTCCCCAGGCAGGA
Band lengths:
211-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types