BtaEX0030275 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17010607-17011926:-
Coord C1 exon
chr7:17011830-17011926
Coord A exon
chr7:17010810-17010962
Coord C2 exon
chr7:17010607-17010721
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCCACCCCCGCTGTCCACAGCTG
3' ss Score
10.17
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
TCTGTCCCCAGCATCCCCTCCATCCAGTCCTAGAACCAAGGACCCTCCTACAGGCAGTCCTCCAGCCTCTCCAGGGCCCCAGAGCCCCAGCACCAAG
Seq A exon
CTGCCCCTGAGCCCGGACCTGCCAGGCCCCTGGTCCCTGGCCCTACCCTTGAGTGGCCCTCGTATCTCCCTCCCTGGGCAGCAGGGCTCAGAGGCCCGCGTCATCCGGGTCAGCATCGACAATGACCATGGCAATCTGTATCGGAGCATCTTG
Seq C2 exon
CTCACTAGTCAGGACAAGGCCCCCACCGTGGTCCAGCGAGCCTTGGAAAAACACAATGTGGCCGAGCCCTGGGTCCAGGACTATCAGCTCTTCCAAGTCCTTCCTGGGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.725 C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(22.7=39.2)
C2:
PF0078818=RA=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCCAGCATCCCCTC
R:
TCTGTCCCCAGGAAGGACTTG
Band lengths:
210-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development