HsaEX6093073 @ hg19
Exon Skipping
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11507920-11510627:-
Coord C1 exon
chr19:11510531-11510627
Coord A exon
chr19:11508121-11508273
Coord C2 exon
chr19:11507920-11508034
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCACCCCTTACTGCCTGCAGCTG
3' ss Score
7.62
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
TGTGTCCCCAGGGTCACCCCCCTCAAGTCCTAGAAGCAGAGATGCTCCTGCTGGCAGTCCCCCGGCCTCTCCAGGGCCCCAGGGCCCCAGCACCAAG
Seq A exon
CTGCCCCTGAGCCTGGACCTGCCCAGCCCCCGGCCCTTCGCTTTGCCTCTGGGCAGCCCTCGAATCCCCCTCCCGGCGCAGCAGAGCTCGGAGGCCCGTGTCATCCGCGTCAGCATCGACAATGACCACGGGAACCTGTATCGAAGCATCTTG
Seq C2 exon
CTGACCAGTCAGGACAAAGCCCCCAGCGTGGTCCGGCGAGCCTTGCAGAAGCACAATGTGCCCCAGCCCTGGGCCTGTGACTATCAGCTCTTTCAAGTCCTTCCTGGGGACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-'19-23,'19-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.758 C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(22.7=39.2)
C2:
PF0078818=RA=FE(43.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCCCAGGGTCACCC
R:
CCGGTCCCCAGGAAGGAC
Band lengths:
210-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)