GgaEX1000686 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6790421-6791448:-
Coord C1 exon
chr17:6791247-6791448
Coord A exon
chr17:6790683-6790928
Coord C2 exon
chr17:6790421-6790535
Length
246 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCCCTGCCCTCCAGTTC
3' ss Score
9.5
5' ss Seq
CTGGTTAGC
5' ss Score
2.22
Exon sequences
Seq C1 exon
CCGGCAGCCAGCCAGCACCGAGCCCTGTGCCAGCGGCAGTTCCCACTCCAAGTCCTTCGACCAGCTCAAGTGCGGGCAGTACCTGTGCAGTGGGGATGCCACTGACTCAGTCAGCGTCACCTCCGCCGGCTCCAGCAGCTCCGACGTGGAGGAGATCAACATCAGCTTCATCCCTGAGTCCCCCGACTGCCAGGAGAAGAAG
Seq A exon
TTCTGGGAATCCACCTCTCTCTCCTCCCTGGACACGTCGGGCATCGGCTCGGGCTCCAGCAGTGCCTCATCCTCCTCCGTCTCCTCCACGCCGGTGACAGCATCCCGCACTCACAAGCGTTCCGTCTCCGGCATCTCCAGCTACTCGTCCCTCTCGCTGCCCCTTTACAACCAGCAGGTCGATGACTGCTGTATCATCCGCGTCAGCCTGGCTGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq C2 exon
GTGACGAGCCAGGATAAGACACCGGTCGTTATTCGCAAGGCCATGGCCAAACACAACTTGGATGGGGACCGGCCTGAAGACTACGAGCTCGTTCAGATCATCTCAGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-'26-28,'26-27,28-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.256 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(22.7=24.4)
C2:
PF0078818=RA=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGCAGTTCCCACTC
R:
TCTCCTCTGAGATGATCTGAACGA
Band lengths:
284-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]