BtaEX6047050 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103128328-103130452:-
Coord C1 exon
chr11:103130251-103130452
Coord A exon
chr11:103129867-103130109
Coord C2 exon
chr11:103128328-103128442
Length
243 bp
Sequences
Splice sites
3' ss Seq
GACCATGCCGTTGCCCACAGTTC
3' ss Score
7.86
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CCGCCAGGCCCCCAGCACAGAGCTCAGTACCAGCGGCAGCTGCCACTCCAAGTCCTGTGACCAACTCAGGTACGGCCCCTACCTCAGCAGCGGAGACATTGCTGACGCACTCAGCGTCCACTCGGCCGGCTCCTCTAGCTCCGACGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCCCCCGACGGCCAGGAGAAGAAG
Seq A exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCCGGCATCAGCTCGGCCTCCAGCAGCACGTCCTCCTCCTCGGCCTCCACCACGCCCGTGGCCAGCACGCGCACCCACAAGCGCTCCGTGTCCGGGGTCTGCAGCTACGGCTCCTCACTGCCCCTCTACAACCAGCAGGTGGGCGACTCCTGCATCATCCGGGTGAGCCTGGACGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq C2 exon
GTGACCAGCCAAGACAAGGCTCCGGCTGTAATCCGCAAGGCCATGGACAAACACAACCTGGATGAGGACGAGCCCGAAGACTACGAGCTGGTGCAGGTTATTTCGGATGATCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-'14-27,'14-24,15-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=0.475 C2=0.551
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(22.7=24.7)
C2:
PF0078818=RA=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGCTCAGTACCAGC
R:
CCGAAATAACCTGCACCAGCT
Band lengths:
294-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]