RnoEX6016145 @ rn6
Exon Skipping
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7126098-7127876:+
Coord C1 exon
chr3:7126098-7126299
Coord A exon
chr3:7126409-7126651
Coord C2 exon
chr3:7127762-7127876
Length
243 bp
Sequences
Splice sites
3' ss Seq
GACACTGCTGTCGCCCACAGTTC
3' ss Score
9.08
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCGCCAGGCTCCCAGCACGGAGCTCAGCACCAGTAGCAGTGCACACTCCAAGTCATGTGACCAGCTCCGGTGCAGCCCCTACCTCAGCAGCGGGGACATCACGGACGCACTCAGTGTGCACTCAGCTGGTTCATCCAGCTCTGACGTGGAGGAGATCAACATGAGCTTTGTTCCAGAGTCTCCTGATGGCCAGGAAAAGAAG
Seq A exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCTGGCATCAGCTCGGCCTCCAGCAGCACCTCCTCTTCGTCAGCCTCTACCACACCGGTGTCTACCACACGCACCCACAAGCGCTCTGTCTCAGGGGTCTGCAGCTACAGCTCCTCACTGCCACTCTACAACCAGCAGGTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq C2 exon
GTGACCAGCCAGGATAAGGCTCCGACTGTCATCCGGAAAGCCATGGACAAACACAACCTAGATGAGGACGAGCCCGAGGACTATGAGCTGCTGCAGATCATCTCAGAGGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219-'25-36,'25-31,26-36=AN
Average complexity
A_S
Mappability confidence:
90%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.457 C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(22.7=24.7)
C2:
PF0078818=RA=FE(43.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCAGCACCAGTAGCAGT
R:
TCCTCTGAGATGATCTGCAGCA
Band lengths:
293-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]