MmuEX6099973 @ mm10
Exon Skipping
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28548955-28550563:+
Coord C1 exon
chr2:28548955-28549156
Coord A exon
chr2:28549464-28549532
Coord C2 exon
chr2:28550449-28550563
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTCTACAACCAGCAGGTG
3' ss Score
4.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCGCCAGGCTCCCAGCACGGAGCTCAGCACCAGTAGCAGTGCCCACTCCAAGTCCTGTGACCAGCTTCGGTGCAGCCCTTACCTCGGCAGCGGGGACATCACCGACGCGCTCAGTGTGCACTCAGCTGGCTCTTCCAGCTCTGATGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCTCCTGATGGCCAGGAAAAGAAG
Seq A exon
GTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq C2 exon
GTGACCAGCCAGGATAAGGCTCCGACTGTCATCCGAAAAGCCATGGACAAACACAACCTAGATGAGGACGAGCCGGAGGATTATGAGCTGGTGCAGATCATCTCAGAGGATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-'32-44,'32-43,33-44
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=0.356 C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(22.7=87.0)
C2:
PF0078818=RA=FE(43.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCCAGCTCTGATGTGG
R:
GCACCAGCTCATAATCCTCCG
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types