DreEX6050575 @ danRer10
Exon Skipping
Gene
ENSDARG00000042409 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr8:30942094-30944312:-
Coord C1 exon
chr8:30944048-30944312
Coord A exon
chr8:30942328-30942603
Coord C2 exon
chr8:30942094-30942208
Length
276 bp
Sequences
Splice sites
3' ss Seq
ATCAAATCTATCTTCTCCAGCTC
3' ss Score
6.54
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTACTCTATGTCGTGTGATATCGAGCCGCCGTCTGAGTCGTTGTGCAAAAAGAATGGAGGCATCATGAAGCGCATGAGCGAGGAGTCGGGCTACAGCAGCGCTGCGTCACACTCCAAGTCCTTTGAGCAGCCGCGATTAAGCCAGTTCAAAGACTGCTTTAAAGATGGAGCTGATTCCCTCAGCCTCACCTCTGCAGGATCCAGTGGCTCAGATGCAGACGAGAGTCTCAGCCTGCTCAACTCTCCTGAATCAGGCAGTCAGAGA
Seq A exon
CTCTGGGAATCACCCACCCCATCATCTCTGGAGGCGTCTGGATCAGGCTTGTGTTTAGAGTCAGGCTGCAGCAGCTCCACATCTTCCTCCTCTTCCTCCTCGTCCTCAGTCTCAGCCTTCACAGGACGGACCTTCAACTTTCACAAGCGCTCAGTCTCTGGCATCTCAGACTACTCGTCTCTCAGTCTGCCGCTCTACAACCAGCAGGCAAACGACTGCTGCATCATCAGAGTCAGCCTGGACTCAGAAAACGGCAACATGTACAAAAGTATCCTG
Seq C2 exon
GTCACTAGTCAGGACAAAACCCCTGGGGTCATTAGGAAAGCCATGGCCAAACACAACCTGGACAATGACAAATCTGAAGACTATGAATTGTTACAGAGGGTCTCAAAGCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042409-'13-17,'13-16,15-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.114 C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(23.0=21.7)
C2:
PF0078818=RA=FE(43.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTGAGTCGTTGTGCAAA
R:
TCCAGGTTGTGTTTGGCCATG
Band lengths:
299-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]