RnoEX0075474 @ rn6
Exon Skipping
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22985373-22987223:-
Coord C1 exon
chr8:22987127-22987223
Coord A exon
chr8:22985931-22986083
Coord C2 exon
chr8:22985373-22985487
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCACACTGTCTACAGCTG
3' ss Score
7.9
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
TGTGTCTCCAGGGTCTCCCCCAGCCAGTCCTAGAAGCCAAGACCCTCCTCCTGGCAGTCCTCCAGCTTCACCAGGGCCTCAGAGCCCCAGCACCAAG
Seq A exon
CTGTCCCTGAGCATGGAGCCACCAGGGCCCTGGCCCATGACCTTGACCCCGAGCAGCTCTCGAACTCCCCTCCTTGGGCAGCAGACTTCAGAGGCCCGCGTCATCCGCGTCAGCATCAACAATAACCATGGGAATCTCTATCGGAGCATCTTG
Seq C2 exon
CTTACTTGTCAGGATAAAGCCCCCAGCGTGGTGCAAAGAGCCCTGGAGAAGCACAATGTGCCCCAGCCCTGGGCCCGGGACTACCAGCTCCTCCAGGTCTTGCCTGGGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-'21-25,'21-24,22-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.843 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
PF0078818=RA=PU(22.7=39.2)
C2:
PF0078818=RA=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTCCAGGGTCTCCC
R:
CTCTGTCCCCAGGCAAGACC
Band lengths:
212-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]