BtaINT0124465 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17021367-17021807:-
Coord C1 exon
chr7:17021584-17021807
Coord A exon
chr7:17021421-17021583
Coord C2 exon
chr7:17021367-17021420
Length
163 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
GTGTGGGGGTGTCTTTCCAGGGT
3' ss Score
7.15
Exon sequences
Seq C1 exon
GCCCTCAACCCCGCGCCCGACACCTTCCTTCATTACCGCACCAGCAAGGTGCGGGCGCTGAGGGCGGCGCGGCTGGAGCGGCTAGTGAGGGAGTTGGTGTCCGGAGATCCCGAGCAGGACCCAGGCTTCGTGCCCGCCTTTCTGGCCACCCACCGGGCCTTCGTGCCTACTGGCCGCGTGCTGGGCCTCCTCCTGCCACCACCTGCGCCGCCACTCCCGCCCGG
Seq A exon
GTCAGTACCAACGGGAGATTCTTCAGTGCCCACCCCAGACTGTCACCTGGATGCTCGATCTACTCTCTGTGGAGCCCTCCTCCTCCCCTCCAGAACCTTCCTCCTAAGTCCTCTCCAGCCCCTCCCTTCTTCACCTGATTTGGGTGTGGGGGTGTCTTTCCAG
Seq C2 exon
GGTGGAAATCAAGAAAACAGAAGGAAGAGATCTGACTTTCAACAAGAACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.474
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(52.3=74.7)
A:
NA
C2:
PF0061815=RasGEF_N=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTCATTACCGCACCAGC
R:
TGTTGAAAGTCAGATCTCTTCCT
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]