MmuINT0134189 @ mm9
Intron Retention
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21792295-21792719:-
Coord C1 exon
chr9:21792490-21792719
Coord A exon
chr9:21792349-21792489
Coord C2 exon
chr9:21792295-21792348
Length
141 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
GATAGAGGCTTTCTTCCCAGGGT
3' ss Score
2.73
Exon sequences
Seq C1 exon
ACCCCCATCCCGGCTACCGACACCTTCCTTCATTACCGAACCAGCAAGGTGCGGGCGCTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTCGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTACCCACAGCCCGCGTTTTGGGTTTTCTGCTACCCCCGCCACCGCCGCCGCCACCACCTCCTGCTGG
Seq A exon
GTCAGTCATTTTCAGGAGACCCGCATGTCCCCATCCCCAGAACCCCATCTACCTGCGCACACACACATACACCTCAAATTTAGAACCGAGGTCCTAACGCCCTATAGCTCTGTTCCCATCTGATAGAGGCTTTCTTCCCAG
Seq C2 exon
GGTAGACAGCAAGAGGACAGAGGGACAAGATCTGAACTTCAGCAAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-Rgl3:NM_023622:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=0.632
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(53.2=75.3)
A:
NA
C2:
PF0061815=RasGEF_N=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCGACACCTTCCTTCA
R:
TCCCTCTGTCCTCTTGCTGTC
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: