RnoINT0126482 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22998889-22999989:-
Coord C1 exon
chr8:22999879-22999989
Coord A exon
chr8:22998943-22999878
Coord C2 exon
chr8:22998889-22998942
Length
936 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GATAGAGCCTTTTTTCTCAGGGT
3' ss Score
2.97
Exon sequences
Seq C1 exon
GCACCACTACAGGACTGGGGAGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCAACCCCAGAGGGGTCTGGAGACGGCCAG
Seq A exon
GTGAGGAAGGGGCCGAGGCGAGCAAGTGAGAGTGGACTCAGCTCAGGGGCCTGGGAGTTAGGAGGAGAGGGGAAAGCTGGAGAACCGAGGGTGAGCCTCCTTAGAACAACGGGACCAGGAGGAAGGGCGGAGCTTAGCGGCGACCAGGTGAGTAGAAAGGGCCTGGGGGCGGCCAGGTGACTCGGTTTAAATCCAGGAAACGGGGTGGGGTCAGGTGATAGCGCTCCCCCCCCCCAAAAGGTGAAACTGAGCGGCAGGGTGCAGGAAAGCCGAAATGGGGAGCGGCCAGGTGGTGATGGGTGGGACTCAGGCTTGGTCAGTGAAGCTTGGCTGCAAAGCTGACTGAAGCCGGGGATGGCCGGGTGAGAAGGGCACAGAGGGAAGTAAGTGCTTAGAGTAGTGGGGTGTCCTACGGGGTTGATGTGGGCATTTGATGATTGGATATAGATTTAGGGAGTCTCGGATTTTCAGAGAAGGACACGGTCAAAAAAAGGAAAGTGCCAGAGACGGGTATGATTAGAAACAAGGTGCGTGGAACGTTCCTCATCTTATTTCATTCACTGCCCCATTTCCCTGCAGACCCCCATCCCGGCTATGGATACCTTCCTTCAGTACCGTACCAGCAAGGTGCGAGCACTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTTGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTGCCCACGGCCCGCGTTCTGGGCTTTCTGCTACCCCCGCCGCCGCCGCCGCCACCACCACCTGCTGGGTCAGTCATTTTTAGGAGACCCGCACGTCCCCATCCCCAGAACCCATCTGTCTGACCCCCTTCCTCAGATTTGGAACCCCCGGCCACGAGTCCTATAACTCTCATGTGATAGAGCCTTTTTTCTCAG
Seq C2 exon
GGTAGACAGCAAGAGGACAGAAGGACAGGATCTGAACTTCAGCAAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=NA C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]