BtaINT0124464 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17021584-17022515:-
Coord C1 exon
chr7:17022402-17022515
Coord A exon
chr7:17021808-17022401
Coord C2 exon
chr7:17021584-17021807
Length
594 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCGGTCCCCCTGGCCCGCAGGCC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GCGCCGCTGCAGGACTGGGGAGAGGAGACCGAGGACGGCGCGGTGTACAGTGTCTCCCTGCGGCGGCAGCGCAGTCAGCGTTCGAGTCCGGGGGCAGGGCCCCGGGTCACCCAG
Seq A exon
GTGAGGAAGGGGTAGGAGGCTGGGGCGGAGCGGAAGGCGACCAGGTGAGGGCGGGGCTGAATGGAGGGGCGGGGCTTAGAGCCGACCTGGTAAGGATGGAGGTGGGTTTAGGGGCGGCCAGGTGAGTGGGGTAGATGAGGAGGCGGGGCCAGGTGAGACCGCGGTGCCCAGCAGGACCTGGGGACTAAACTGGATGGCTGGGCTTAGGTAAGCCAGGTTTAGTGGGGCGGAGCTGGAGAGGGAGGAGGGGTCTTTAGAAGCGGCAGGGCCAGGGCAAGGTGGGGCGGAGAGCACGGGAACGCGCCAGTGAAGCGAGGCAGGAGAGCTGAGAGCAGCCTGGGGGTAGGGATGGGGGTGGGGCTTTGGGGATTGGGGGTGCCAGGTGAATAGAGCAGAGGGCGGGCGTAGCCTGGGCGATGAGGCTGTTCCGGGCGGGTTTCGGGTGCCGTTTGTGCACGGTACATAATAATGAACTAAGGGAGTACACAGGAATAGACAGGGTCAGGTGCAAAAGTGGTGGTCCCCAAAGACGCATTGGAGATGGGTGCCGGGGCCCAGTCCTCTGTGTCTCATTGCGGTCCCCCTGGCCCGCAG
Seq C2 exon
GCCCTCAACCCCGCGCCCGACACCTTCCTTCATTACCGCACCAGCAAGGTGCGGGCGCTGAGGGCGGCGCGGCTGGAGCGGCTAGTGAGGGAGTTGGTGTCCGGAGATCCCGAGCAGGACCCAGGCTTCGTGCCCGCCTTTCTGGCCACCCACCGGGCCTTCGTGCCTACTGGCCGCGTGCTGGGCCTCCTCCTGCCACCACCTGCGCCGCCACTCCCGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=NA C2=0.227
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(52.3=74.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACTGGGGAGAGGAGAC
R:
CAGGTGGTGGCAGGAGGAG
Band lengths:
310-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]