MmuINT0134188 @ mm10
Intron Retention
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21988046-21988959:-
Coord C1 exon
chr9:21988849-21988959
Coord A exon
chr9:21988276-21988848
Coord C2 exon
chr9:21988046-21988275
Length
573 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACTGCCCCACTCCCCCGCAGACC
3' ss Score
10.71
Exon sequences
Seq C1 exon
GCGCCGCTGCAGGACTGGGGCGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCGACCCCAGAGAGGTCTGGAGAAGGCCAG
Seq A exon
GTGAGGAAGGGACTGAGGCGAGCAAGTGAGGGCGGACTCAGCTCAGGGGCCTGGGAGTTGGGAGGAGAGGGGGAAGCTGGAGAGCTGAGGGTGAGCCTCCCTAGAACTACGGGGCCAGGAGGAAGGGCGGAGCTAAGAGGCGACCAGGTGTGTGGAAAGGGCCTGGGGGCGGCCAGGTGACTTGGTTTGAATCCAGGAAACGGGGTGGGGCCAGGTGATAGCGCTCCCCCCAAAGGCGAAACTGACCGGCAGGGTGCAGGAAAGCAGAACGGAGGAGCGGCCAGGTGGTGATGGGTGGGACTCAGGCTTGGCCAGTGAAGCTTGGCTGCAAAACTGCCTGAAGCCTGGGGTGGCGGGGTGAGGAGGGCACAGAGGGAAGTGCTAGAGTAGTGGGGTGTCCTGCGGGGTTGATGTGAGCATTGCATGATTGGTGTATATTTAGGGAGTCTCGGAGTTTCAGAAAAGGACACAGTCACACCCCCCCAAAAAAAGTGCCAGAGATGGGTATAATTGGAAACAAGGTGCTTGGAACGCTCCTCACCTTATTTCATTCACTGCCCCACTCCCCCGCAG
Seq C2 exon
ACCCCCATCCCGGCTACCGACACCTTCCTTCATTACCGAACCAGCAAGGTGCGGGCGCTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTCGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTACCCACAGCCCGCGTTTTGGGTTTTCTGCTACCCCCGCCACCGCCGCCGCCACCACCTCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146:ENSMUST00000045726:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=NA C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(53.2=75.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGACTGGGGCGAG
R:
GTGGCGGGGGTAGCAGAAAA
Band lengths:
310-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types