BtaINT0125543 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51055531-51055915:-
Coord C1 exon
chr22:51055773-51055915
Coord A exon
chr22:51055626-51055772
Coord C2 exon
chr22:51055531-51055625
Length
147 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CCACCCCACCCCCACCACAGATA
3' ss Score
7.43
Exon sequences
Seq C1 exon
GACGGAGAGAGCCACGTCAGTGCTCCTGGCTGATCCCTGCTTCCAGCTCCGCTCCATATCTTACCTGTTGGGGCAGCCAGAGCCCCCAGCCCCTGGCACTGCTTTGCCTGCCCCTGACCGGAAGCATTTCTCCCTACAGAGTT
Seq A exon
GTAAGTGGGCCAGGGAAGACAGGGATTTGGGGCTGGGTCAGGTCATTCGTCTTAAGAACAAATTCCCAGGCTGGAAATACTAAAGAGGCACTGGGTTCTGAGGCCACATTTGGCCTGACACCTCCTCCCACCCCACCCCCACCACAG
Seq C2 exon
ATACAGATTACATCAATGTGGAGGAGCTGGCCCAGGTGGAACAGATGTTGGCACACCTAACCTCTGCATCTGCGCAGGCGGCAGCTGCCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=PU(3.5=6.1)
A:
NA
C2:
PF042167=FdhE=FE(36.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGAGAGAGCCACGTCAG
R:
GCGCAGATGCAGAGGTTAGG
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]