BtaINT0126093 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:62027362-62028983:+
Coord C1 exon
chr9:62027362-62027437
Coord A exon
chr9:62027438-62028742
Coord C2 exon
chr9:62028743-62028983
Length
1305 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
ATGGTGTTTATTTTCCATAGTAT
3' ss Score
6.5
Exon sequences
Seq C1 exon
GTGTTCATTGTACCCATGGTTTCAATCGCACTGGTTTCCTCATATGTGCCTTCTTGGTGGAGAAAATGGATTGGAG
Seq A exon
GTATTTGTTTCTTGTTGTAGTGAAAGAAGATATATTTAGTAATTGATAAAAAATTTTATTGATTTTTTTTCAGTTTTAGCATTTTATATTGCTAGGTTTTTGGTGAAGTAATGATTAACATGATTTCAGTGGTTTTTATTTTAGATTTAGTTAATCTTTAGAATACCATTCATTACTGATGTTTTCTACCAAGTAGCATGTTGAGTGCTTATGGATCCTAAATACTATACATTTTCTTTCCCAGATTTTTTTTCACATCTTTCAGAATTATCAGAGATAAGTTCTCCCAATATTTTGTGTATGTTTTCACCTTGGAGGTTACTACTGCTGTTTTTCATTTCATTTTTAAGTACCTTTAAAAAAAAATAGCTGCTGAGTATTAGAAAAAGCTTAAATACCATAAATACCACGCACCTTATGTTAAAACCGTTTCAGAATGGTTTGTCTCTTAGTAGATTGAATGCCTTGAGAGTAGGGACTGTGGTGTCTCCATTTTATAAAACTTCTGTTGTGCTTTGTATAATAGTCTTAAATATAAAGGTATTTTGGGGGACTGAGTTACTCTGTTTAAGCCAATCAACAGGTCTTTATGAGCACCTGTTAACTTGTAAAGTGTCTTTTTAGATTCTGAGAGATTAGAGAATGAGATATTTCTGAATTTCCTCATATACTTTAAAGGTCTTTTGTTTACAAAGCCTTTCATGCAGTAAGTCCTTCTCTGAATATAATCACCTGAAGTAGACATGTGATTATATGTTTCCCTGTTCACTTATCCTCTGTGGTTCTCTACTGCATACATTCTGCCTCTGCCTTTTTGCCCTTTCAGATGCTCTAAAAGGTAACTCTACACTATGTCGACTGCTATGTCAGACTCAGCCTATGCTTAGCCTCGCTCTGGTGACCTCTGCTCTTAACGCTTGGGTCTGTTGAAAGTTCCTGAAAAACCAGCATGCTTTTACTTTATCTTCATGTTGCTTTTCCTTGACTGGTGTTTTCTGTTACAATCAGACCTCAACCTTTAAGGGTTTACTTAAATTCTTTACAGACTCCACCCGGGTCTCCTCATTACACTCATTGCAGTTTACCTTTAGAGTTTAGGAAATACCATGTACCTTGTGTTAAAACTGTTTCAAAATGATTTGTCTTAGTAGATTGAATGCCTTGAGAGTAGGGATTGTGATGTATCTATTTTATGAAACCTCTATTATACTTTGTTATAATAGCCTTAAATATAATAAGAGAATTTTGATAAATCTGCATAAATGGAGAGTAGTGAGGAAATTGCATGGTGTTTATTTTCCATAG
Seq C2 exon
TATTGAAGCAGCAGTTGCTACTTTTGCTCAAGCCAGACCACCAGGAATTTATAAGGGTGATTACTTGAAAGAACTTTTTCGTCGCTATGGTGATATAGAGGAAGCACCACCCCCACCTCTATTGCCAGATTGGTGTTTTGAGGATGATGAAGATGAAGATGAGGACGAGGATGGAAAAAAGGAATCAGAACCTGGGTCAAGCGCCTCCTTTGGTAAAAGGAGAAAAGAACGTTTAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725:ENSBTAT00000003532:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.395
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(18.8=100)
A:
NA
C2:
PF0078215=DSPc=PD(23.3=38.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCATTGTACCCATGGTTTCA
R:
AAACGTTCTTTTCTCCTTTTACCA
Band lengths:
310-1615
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]