RnoINT0128182 @ rn6
Intron Retention
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48583539-48584918:+
Coord C1 exon
chr5:48583539-48583614
Coord A exon
chr5:48583615-48584677
Coord C2 exon
chr5:48584678-48584918
Length
1063 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAT
5' ss Score
7.3
3' ss Seq
GAAAATAATTGTTTCCATAGCAT
3' ss Score
5.05
Exon sequences
Seq C1 exon
GTGTTCACTGCACCCATGGCTTCAACCGCACTGGTTTCCTTATATGTGCCTTTTTGGTGGAAAAAATGGATTGGAG
Seq A exon
GTATATTAAATAGTGTTGTTATAGTGGAAGAAGATACATGAACAATTTGTGATGCTTATGAATCCTGTAGATGATATATTTCCTTTTCATATTTTTCTCGTATTTTGGAGTTAACAGAGATTGGATCTCAGATGTTTGGATTTGTAATCAGCTTTGGAAAGGTCTGTTTTCCTTTAAAGTTTCTCTTCTCTGGCTGAGAAGAACTAGGGAAAGCTATAATGCTCTATGAAGGAAGCGTTTTAGGATGGCATTAATCTATTTAAACAAGTCTCGTCTTTATTGAGCTTGTTATTTGTGAATTATATTTTCAGATTTTAAAGGATTAGATTCCAATTACTTGAAATTCCTATGAGACTAGGATACTGCTAACGGAATTTTCTTATTCCTGTTCTAGGATCATTGTTTATGTTTCTAAAACCTTTTACACATTAGGTCCTTTTTTGGAATGCAGTCAGGCAAACACTAATCTGAATGTGTTCTGTTCTTTTATACTCAATGGCTGTCTACGTTGTGTACTTTTCAGCTTTGGCCTTTCAGAGTACTGTGCACAGTAGCATCAGACTCCTTTGCCAGATCCGGCCAGTGGCTAGTGTTCTTCCAAGATGTGTAATCTTGGGGCCTAGGGCTATTGGTGGTTTCTGATGAACATTGTGTATGTTCACTTGCCATTCACATTTTCTTGACCCAAGTTTTCTTTTAGAGACCTTGACCTTCAGTATTCTATTAATTTCTTTCATTGGCTAGCCATGTCTGTCATAAGCAGTCATGTCAATGTGCTTTAAATATGATAGTATATAATATATTAGAATGTACCATGTATTATAGTGACCATATATTATAGTGGGCCATGTAGACGATATATGTGTACCATATGTTACAGTGTACTATGGGTATGTGTTTTTAGAATTAGTTTATCATTGACTGAAAGCTTTGCAGGTGAAGACAGACTTATATTTGTCTGTTATATAATCCAGTTATACTTTTTGTGGTACCTTGAGTATGATTTAATAATTGATAAGTCTACATTAAATGGATACTAGTGGGAAAATAATTGTTTCCATAG
Seq C2 exon
CATTGAAGCAGCAGTTGCTACTTTTGCCCAAGCCAGACCACCAGGAATCTATAAGGGTGATTATTTGAAGGAACTTTTTCGTCGCTATGGAGATATAGAAGAAGCACCACCACCACCTGTATTGCCAGATTGGTGTTTTGAAGATGATGATGAAGAAGACGAGGATGAGGATGGAAAAAAGGACTCAGAACCAGGGTCCAGTGCTTCCTTTGGGAAAAGGAGAAAAGAGCGCTTAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867:ENSRNOT00000010614:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.378
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(18.8=100)
A:
NA
C2:
PF0078215=DSPc=PD(23.3=38.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCACTGCACCCATGGC
R:
AAGCGCTCTTTTCTCCTTTTCC
Band lengths:
310-1373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]