GgaINT0085884 @ galGal4
Intron Retention
Gene
ENSGALG00000015787 | RNGTT
Description
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:HGNC:10073]
Coordinates
chr3:75271491-75275011:+
Coord C1 exon
chr3:75271491-75271566
Coord A exon
chr3:75271567-75274761
Coord C2 exon
chr3:75274762-75275011
Length
3195 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
TTTTTTTTTTTATTTGACAGTAT
3' ss Score
7.85
Exon sequences
Seq C1 exon
GTGTCCATTGCACGCATGGTTTCAATAGAACTGGATTTCTCATCTGTGCCTTCTTGGTTGAGAAGCTGGACTGGAG
Seq A exon
GTAACTTTGAATTTTAATTCTTAGGGATTTATGGACCTGAACAATCTTCGGTATGTTTCACTCGTTGTCCTGGCAGCTATCCTCATGTATTCACTGTTTAAATTAAAACTTCCTACTAATTTTGAGCAAACAACCTATGTTGGCATTATTCATATGTTAGTAGTTTCGCATTGGTCAGTCAAGCTTTTCAGTTCTGCTAGGTGAAAGTCAGCTGTACCTGCTGTGTGAGGGCTTCTAGAAATGTCTGGATTGTGCTGGCTCTCTCCCAAGTGGCATGCTCCACACTTTGAGAGAAAACAGAGTTCAGGGAAGCCTGAAGTATTATTTCTTCTATTTCACATAGGTTTGCTTGTAGGCTCTTTTGGTTTCTTGACTTCTGGTAAGATGCCATTAGCTGGAGAAACAACAGAGTGACAAGTTCCCTTCTGGAGGGGTGGTGAGAAGGCAAAGCTGTTTCCAGCTTGCCATTTGACTGAAGTCTGCATCACGTTTCTCTACAAGCACTTGTTTGTTGAGTGAATTTAAAACTTTGGTGCCTTTGTGCATACTAGAGGTCTTCTCCTCTAATTGCTAGTTAAAGAAGAAAAAAAGTAGGCCATACCATGCTGATAAGCCTGATTTTTGCATGTTTGGTAGTATTCATGAAACACTGTTTCTGTGATGGCTGGGTTGCTTGCAGAGCATGTCACTGAACAAGTCCCGTCAGCATTTTAATGGTATTTCTTGTACAGTCCTTTAAGTGAAGAAAATTTCACTCTTGTTCTTGCATGTTCTTGTGATACATCTATGGACAAAGAATTTATTTGGTGATGAGCATGTATATGCAAGCAGTTTGCAAAGAAGTAGGTCGTTGTTTTCTATTAGTAAACTTGAAGTAAAGACACCGGAGTAATGGAGACAGAATGCCATTAACGGTGGGTGGCTGAATCTTGGCAGAATCTTAGCTGACTGCAGGAAGATACAAAGATTGTTATAGTGTGATTGTAGTTACTCTTACAAAGTAGAAAATGGGTTTGCTTTTAATCTAACAACTTAAAAGCAGCATGCAATAATCCGGCTCGATATTGGTTGTTTGTTCTGAGGAGGAAATGCACTTAAATCTATTTGAAACTGCTTTTGTGCAGCTTTTTACTTCTAAACCTCTGTGGGAAAGGCCTTAAAACTTAGCAGCTATATAGTGTTGTTTGTTCACTTTGTTCAAATAGCTGATGGTATAAATGTGCTCTTCTCTGTCAAATTATTTTAACAGAGTGTCCAGATGTCACTTAATAAAAACGTCCACCAGAAAAGAAGATTTCTGCAAGGTGGTAGTTAGTGCTGAGCATTGTATTAAGATAAAGCCAGTTTGCTGTATCATCCTTTAAAATAAGTCATTGCTGTTTGCTGAGGAGGAAATAAGGCTTTCCTGATGGAAAAATCCATCCATATTCATTTCTGAAGCGTATGGTACAAGAGTACTGCTGATGCATTGTGAATTCTGAGATGTATTTTACAGTTAGTTTAAAGAAAGGTCATCTAGAATGAAAGTCCTCCAGCTAGTTATCAGAAACCTTAGTTTTCTTTTATATAACTTTTTCCCCAAAGTCTCCTCTGTTTCTAGAACTTGCAGAGCATGTTTTCCTACAGCAAATTTCAAGCTCGGAAACCTAGCACTGGATCTTTTGGCTTTTGTTACCATATACTCCACAATAGTGTAGAGTTCTTGTAATACAGTGGGGGACAAATCTGAATGTCTTCTAACACCCAAGACAAAAGAGATAGAAATTAGGAGCCATAAGGATCAGAATAAGGAAGATTGATCTTTTGTAAATAACTCAGATTATTAAGCTGTCACTTCTGAGATTTGATGACCATCTGATAGCCTCGCTCCTGAAATTGCTTTGTTCTTCACTCTTAATCAAAGAGAGAACCAAACTTACCTGGTTCTTGGGAAGTGCCTTTCTCAGAGCAGGCACTGTTTCATACTGGATGGAGAAGACAAAAAATGCCTCCTGTATTTTTTTTCCCATTTTAGCTGTATGCTTTCCTTGTTCCAGTGGTTGGCTATTTTCATATTAAAAAAAATAAAAATCACAGCAAGTAGCATGTGCTTTTGTTCCAGCTTAAAGATTGAAGCTTGTCAAGAAGCCTGACGAGGGGATTTACCTTTTATGGTATCTCTCTACTCTTTTACATAGAATCGCCAAGGTTGGAAAAGGCCACCAAGATCATCCAGTCCAACCATCCACCTACCACCAGTATTTCCCAGTAAACCACTTCCCTCAGTACAACATCTAAATGTTTCTGAACACCTCCAGGGGCAGTGACTCCATCACCTCCCTGTGCAGCCCATTCCAGTGCCTGACCACTTTCAGAGAAGAAATTTTTCCCAGTATCCAACCTATATAGCAAGATTTCTAAATGTTGATCTGTGGAGCATTACTGCTACATAGAATTATGTCCATTTTCATAGATCTGTAAAAACAGCAATAAAACCCTTGCAAGATGATTCCACTGTTTCCTGAAATTTGAAGAATGTTCTTGTGCTATGCTCACTGTCACATGTTTTGTAGTGCTTTTTAGTTGACTGATGCTTGACCGTTAGTTTTGGTTTCTAACATTTTTGTTATCTGGTCTCCAGTTCGTTATTGCCATTAAGGTTAAGTGTTAGCTGCATAGGAAGAGTCTTCTAAAATGCAGATTTTGAGGGAAATGTCCTGTAGGAGAAGTAATTTCAAAAGATTTGAGTGCTTCCTGCTGAAGTGTTTGCAAAACCTCTAAATAAAAGTGAAGAAAGCTTTTAGACAGAAAAGTGCAGCTATTTGAGTGTTACCACCTGATTTTTTTAATAAGCTTTTTAAAATCTTTTTTTTCTCTTAGTTTGATCTGTAAGTACTTACCTGTGTGTCACTCATTCATTTCTTTATAGCAGTAATGAAAATTATAATGAAAGTTTAATCTAAATGACCAGCAGACTGCTCTTTGCTGCAACTAGACGTGAAGCAGACCAAGCTGCAGTTTCTTTTGTGAATGTACGCAGTGCAAGATCGACACAATTTAAGTGTGATGCTTTGAATATCATGAATGTTTTTGCAATTGTCACCTTAGGATTTTTTCTGAATTCTTGGTATTGATACATTTTAAGTACGCTTTAGTCATACTGTGCCTTAAGAAAAGCAGACAGAGTAATTTCCTTTTTTTTTTTTTATTTGACAG
Seq C2 exon
TATTGAGGCAGCTGTGGCTACCTTTGCTCAGGCTAGACCACCAGGTATTTATAAAGGTGACTATTTGAAGGAATTATTCCGTCGTTACGGAGATGAAGATGATGCACCATCACCACCTGAGCTACCGGAATGGTGCTTTGAGGATGATGAAGAGGAAGATGATGACAATGGTAAAATGGGAGGCCAAGAATCAGAACCTGGATCATCAAGCTCTTCCTTTGGCAAGAGGAGAAAAGAACACCTAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787:ENSGALT00000025457:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.482
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(18.7=100)
A:
NA
C2:
PF0078215=DSPc=PD(23.1=36.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]