BtaINT0127290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005980 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr23:47907590-47909459:-
Coord C1 exon
chr23:47909448-47909459
Coord A exon
chr23:47907669-47909447
Coord C2 exon
chr23:47907590-47907668
Length
1779 bp
Sequences
Splice sites
5' ss Seq
TTTTAAAAT
5' ss Score
-18.96
3' ss Seq
TTTCCCCCGATTCAGGTCAGAAA
3' ss Score
0.08
Exon sequences
Seq C1 exon
AGTAACTGTTTT
Seq A exon
TAAAATTTGCAGCTGTGCTGGGTCTTTGTTGCTGTGCACGAGCTTTTCTCTAGTCGCAGCGCGTGGGGCTGCTCTCCGGTCATGAGGCACTGGCTTCTTACTGTGCTGGCTTCTCTGGTTGCAGAGCGCAGGATCAAGGCGTCTGGGCTCGGGAGGTGTGGCTCCTGGACTCCAGAGCACAGGCTCAGTGGTTGTGGCCCTAGGACCTAATTGCTCAGCATGTGTGTGGGACCTTCCCGGACCAGAGATCGAACCCCGGTCTCCTGCACTGGCAGGCGGATTCTTTACCGCCAAACCCCCAGGGAAGCCCTGCACATGACTGGTTTCTGATTCCACTTACCCGTCCTTCTAATTGCACTGTCTTTGATGGTTCTAGACATCTGTATTTAAAAACCTCTACCAGCAGTCTGGAACCATCTCTCAGAGGAGAATGGACGTCCCTTTCTTTGGCTACAGCTGATGCTCAAACTTGGGCTGTGTGGATTCAGGCAGTGCGAGCCCTTCCCGTCCTGGGAATCTCGTCCTGGGAATCTCGGCGCCAGGCCCATGTTGTCCATTACCCGCGTGTGGGCTTGTGTGCCTTCACCGGCTCTGGGGCCTGGTGATGCGCGTGGGGATCGAAATGGAAGGCCAGCCCCCATCGGCAGGTCGAGGGAGCAGCGCTGGCTGGCTGCCTGCTGTGTCTTGCGGCGGGGGGTGGGGGGGGGGGGGGCGGAGGGGGTGTGTGTGTCCAACCAGGGCAGCCCTGGGGTCATGAGATAGCGGTGAGCCCTGTTTGTTGCTATACAAAGCCTTTTCCCAGTGACCTTGGAACGTGGCAGCTGGGGAAGAGGACTCCAGTGAGGCAGGAGATGATAGCACGCCCCGTGCCCTGAAGCCCACGCCCTCCCTTCCCTGCCCCCCTCTTCTTTGCTTCTCTTCCTCCTCACTCTGTGCCCTGGCTCTGCCATGCGTCCATCCTTGCAGGCGCAGATCAGGCGCCATGGAGCCCCCAGAAGGAATCCTAACAGAAGGAGGGGGCGCTGGTCACAGCAGATAGTGGCCAGGTCAGGCAGGTTGGGGGGGCGCTCGGGGACCCAGCTTCTTCACACTCGGGGTGCTGAGTGGAGCACGTGGTCTCTGGGGAGACTCGTCCCTGCTGGCCCCTCATCTCCCACCCGCAAGAGTGTAAAGTGAGGGGCAGACCCGACACCGCCCCACCCCCGCCCAGGCCGGCTAGCTGGCTAGAGCCACAGGACCCTTGAGCAGAGGTCGGGCGGGAGGCACCCTGGGAAGTCCAGGACTCAGCTCTTCCTGTCCAGGTGGGCGGGTCAGACCCCTAGAGACCCCCGGGGTTTCAAGATGGCCCTCCATCCTGTTCGGTGCCCCGCGTCTGCGGTGCTGCCAGGCTGGGGTGTGCGCTGGCATCCTCGCTGTGGCGGCCACGGGCGGGGGCCTGCGCACGTCCCTCCTCTCACCTCTGTTCTTGTTATTATGTAAGATTTTTTTTTTTTTTATTGTGAGATTTATTTTAAAGATATGTGTCTTGCTTTCATTGTTAACTTTCAGTATTTTAAAGACAAACCCATTATCCACTCAGGATGAGGGAAGATGACCGTTTGCCTTATTGAAGTTCTCGGGGTTCATTTCTTACTGTGTTTTGTTTATTTTCTTGAAAGGGGTGGGGGGTGGGAACCAATGCCAGTGATCCCCGGAGAAGGAACCGGAAGCAGACTTTCCTTTTTCGCTGCAGTAGAAAGCCAGGTAAATATGTATTTTTTTTCCCCCGATTCAGGTCAG
Seq C2 exon
AAACCCTTCCCTTGTCAAAAATGCGGTGCCTTCTTTTCCACCAAATCTAACTGTGAACGACACCAGTTGCGCAAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005980:ENSBTAT00000044565:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138941=zf-C2H2_4=WD(100=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]