BtaINT0127292 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005980 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr23:47900804-47902968:-
Coord C1 exon
chr23:47902162-47902968
Coord A exon
chr23:47901107-47902161
Coord C2 exon
chr23:47900804-47901106
Length
1055 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AATCCCTCTCGGTTCCCCAGGAG
3' ss Score
8.39
Exon sequences
Seq C1 exon
ACAGCCAGTCGGACGCAGAGGCCTCGGCGGCTGGCAGCGAAGTGCTGGACCTCACCGCCCGGGAGCTGCCCGCGCCAACCCCAGAAGGCGCCTCGGAGCCCAGCCCGGCCGCGGCCCCGGCCCGGGAGGACCCCCCGGGGGGCGCGCAGGAGGAGGCGGAGCAGGTGGCGACGGAGGAGGACCTGCATCCCGAAGAGGAGGACGCGCAGCCCACGGAGGAGGAGGAGGGGGAGGAGGAGTGCGCGGAGGAGGAGCCGGCCGAGGCCGCCGACGGCCCCGAGGAGGACACGGTCAGCAACAAGAGCCTGGACCTCAACCTCGCCAGCACGCTGATGGGCTTCAAGCTGGCCGAGGGCGAGGCGGGCGCGCAGGACCACAAGCACACCTGCCACGTGTGCGGCAAGAGCTTCAAGTTCCTCACGACCCTCAGCCGCCACCGCAAGGCCCACGACCGCGAGGAGCCCGGTGACGAGAGCGCGCCCCCCCGGGAGCACGAGGGGCCGCACCCGGCTGACCCTGAGCCCCCCGCCCCTGAGCCCCCGGCCGAGGCGGAGGTCACACCCGATGCCCCGGCGGAGAAGCAGAGCGAGGCAGCCGAGGGCCCCTCGGACGCGGACGCGGACGGGGACGGGGAGGGCCCCGCCGAGAAGAGACCGCTGGAGAAGAGTGACGACGACAAGAAGCCAAAGACAGACACGCCCAGGAGCGCAGCCAGCAAGGCGGACAAGAGGAAGAAGGTGTGCAGCGTGTGTAGCAAGAGGTTCTGGTCCCTGCAGGACCTGACCCGGCACATGAGGTCGCACACAG
Seq A exon
GTGAGAGGGCGGGGCAGACTGGGCGGGGCGGGGGGGCGGGGACGGAGCTGGCGGCCCCGGGCACCCTGGGCACGCAGAAGGCCCGTCCTCTTAACACCCAGAGGGCACGGGGAGCGGCAGTGGTGTTTTCCAGAGCCTTCTGATCAGCCTCTTTGCCCTCTGCACCTCAGTCTTCCTGTCCCTAGAAAGGGGGGTGATGGCTGCCCTTGTCTTCTGGAAGCTTCCAGAGGAGTACGGGTGCCAGGAAGGGCTGCGGGGTGGCCCAGGGAGCAACAGTGTGGCGGGAGTTGGGCTGGGCTCGTTGCACCTGGGCCTGCACGCGGTGTGTGTGGGGGGGGGGGACACGGGGTGCCCGTCAGCCAGCTCTAGTTGCCCGGGCCTGTGCGGGGGGTGGGGGGGGCTCCCAGGTGTGCCCATCAGCCAGCAGGTGCTGGGTTGGCCGCAGGGCTGATGGGGCTAAACCGAGAGGGCACCTGCTCGCTCCCCGGGCACAGCCCCGCTCCTCCTGGAAGCCACCACCTCTGGGCATGAGGCCACAAAGCCCCTGCAGGGGCCACTGCTTGGGTAGAAAGGAGGCCTGGACGCCTTGCCCCACCGAGCAGGAAGACACCCCCGTGTCTTGGTCTGTGCTTCCCTCCACTCCCGGTGGCTAAGGAGGTTTCATCCCCTGCCGAGCCCCTGCACTGGGCTCCCAGCAGAGGTGTTCGTGGGCTCCAGCCAGGTGGTTCCCTCAGCTGCTCTGCGTCCAGGCGCTAGCGGGTCCGTAGCTCTGACTCCGCAGTGGGGCCAGCCCTGGGGGCCCTGTCCGGCACCTGTGTGCCCGAGGGTCCCGGGTCGGGGGTGAGAAAGCAGACCCGACCGAGGCTGAGGAGAAGCTCCGTGCGGCCCTGCTCCCTCTCCTGTGCTGTGGTTGGGACAGAGGAGGCTCCTGTGAGCGGACCGGGGGCTCAGTGGCCCACCACGCTACCCCTCGGGCCGTGGCTGTACGTGGGCGGAGCTGGGCAGTGGTCGCGGGCGGCCGGGCTCACAGCCCTGAATCCCTCTCGGTTCCCCAG
Seq C2 exon
GAGAGAGGCCGTACAAGTGCCAGACCTGCGAGCGGACCTTCACGCTGAAGCACAGCCTGGTGCGCCACCAGCGGGTCCACCAGAAGGCCCGGCACGCCAAGCGCCACGGCAGGGACAGCGACCGGGAGGAGCACGCCGAGGAGGACAGCGAGAGCGAGTCCGCCCACAGTGGCGCGCACCCCGTGTCGGAGGGCGAGGGCGACGCGGGCCTGCACGCCAGCGCCCACGTGGCTCTCACGCGGAGCCGGAGGGAGAGCCTGGCCGCCAAGGACGCCGGCCGCCGGGAGGAGCGGGCGGCGGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005980:ENSBTAT00000044565:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=NA C2=0.961
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=8.5),PF134651=zf-H2C2_2=PU(40.0=3.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(56.0=13.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGACAAGAGGAAGAAGGTG
R:
AGGCTCTCCCTCCGGCTC
Band lengths:
347-1402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]