HsaINT0143330 @ hg19
Intron Retention
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:10449]
Coordinates
chr6:7246657-7252213:+
Coord C1 exon
chr6:7246657-7247454
Coord A exon
chr6:7247455-7248743
Coord C2 exon
chr6:7248744-7252213
Length
1289 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTTTCTTCCATTGTTCCAGGGG
3' ss Score
10.2
Exon sequences
Seq C1 exon
ACAGTCAGTCGGATGCGGAGACTGCAGCCGCCGCGGGCGAAGTGCTAGACCTCACCTCACGGGACAGAGAGCAGCCGTCGGAGGGCGCCACTGAGCTCCGCCAGGTCGCAGGGGATGCGCCTGTGGAGCAGGCCACGGCGGAAACGGCCTCGCCGGTGCACCGGGAAGAGCACGGGCGTGGGGAGAGCCATGAGCCGGAGGAGGAGCATGGCACTGAGGAGAGCACTGGGGACGCCGACGGCGCGGAAGAGGACGCGTCGAGCAACCAGAGCCTGGACCTGGACTTCGCCACCAAGCTCATGGACTTCAAGCTGGCGGAGGGCGACGGCGAGGCAGGCGCCGGGGGCGCGGCCTCGCAGGAGCAGAAGCTCGCCTGCGACACCTGTGGGAAGAGCTTCAAGTTCCTGGGCACCCTGAGCCGCCACCGGAAGGCGCACGGCCGCCAGGAGCCCAAGGACGAGAAGGGAGATGGCGCCAGCACTGCAGAGGAGGGGCCCCAGCCCGCCCCTGAACAGGAGGAGAAGCCCCCCGAGACCCCGGCAGAGGTGGTGGAGTCGGCCCCGGGTGCCGGGGAGGCCCCGGCGGAAAAGCTCGCGGAGGAGACGGAGGGCCCCTCCGACGGGGAGAGCGCGGCCGAGAAAAGGTCCTCAGAGAAGAGCGACGATGACAAGAAACCAAAGACAGACTCCCCCAAAAGCGTGGCCAGCAAGGCAGACAAGAGGAAGAAGGTCTGCAGCGTGTGCAACAAGCGGTTCTGGTCGCTGCAGGACCTGACCCGGCACATGCGCTCCCACACAG
Seq A exon
GTAACCAGGGCAGGCCAGGTCCCCGGCCCAACAAGAGGAGGCGAGCCGGGCACCTCTCCTAGGAGCTCCCCTGAAGCGGCGCTGGAGGCCACCGAGAGAACGTTTGCTTACGTTGCCGGTGTGCCCTTTAAGCCCGTGAACTAGGAGTTTTAAGGAGTTGTACTCTCAGCCCTTGAAGACGGTGCAGGCCTCCTGCAGCCAGGCAGGAGAGGGTCCTTGGCCGTTGTGTTTTTGAGAACGCTGTGATCCGCCTTTAGCTCTGCTGCCTCCGCCTCCCCATCTGTAGAGTGGGGGTAACAGCTGCCCTGTTTCATAGAGGTATCTAGGAGAGGGTGCTTGTGCTGGGCATTTGGGCCACTTAGTCCTGTCTAGTCCTGTGGCCTGGACGACAGGCACTGCCCCAGGCCGCTGTGGGGCAGGCACCCTGGGTGATCCATTAGGGTCAGGAGGGCCTTTTCCTTTCTTAGCCGTGCAGTTCGGCTGAGATGACTGGGACAGGACCCTTAGCCACTGCCCTTCACACCGTTCTAGAGTTCACCCACCACCTGCAGGGTGGAGGCTGCAGACCCCAGAGCAGGGGCGCTTACTTTGACACAAAGACCTGAATATGCTCATGGAGTCCAGAGATATATCCTTCTTCTTTCCAAAATAACCTGTCCCTCCTCTCAGCCGCAGCTTCCCTCCCTGTCACAGCTGCAGCCCGCAGTGAACACATGTGCCCCGACCCAGCGCAGTCGGCTCTGCCCTGCGCTTGCCCGTGTGAAGGGCCAGGGTCCTTGGCTCTCAGAAGAGGGATATTCTTGGGCTCCCAACAAGCGTGGTGGGCCCTGCCCTGGGCCTGGCGTGTGAGCCATCAGGAAAGCCCCCGCTGCACCACATCGCAATGCAGAGGGTAACTGGTGCCCCCGACCTAGGTGCTGCTGTCCATACAGATCCCTGAGAGGGTCCACTCCTGTCCCCCTCTAGATTCCTTCCCAGTCTCTGGTCGAGGCCAGTCTGCACATCTCCTGAGGCTTCTGCTTCTGGGACCTGGGTTTTCTGGATCAGTATGTAGAGTGCCTGGGCTGAGAGAGGAAGGAGAGGAAAGGTCTCAGACTGACAGCTTGAACCAGCAAACAGAGCTTGTCCGTCCTCAGTTTGCTGGTTCAAGGAAGAGGCCTCTGGCTGAGTAGGACGGAGTCCTGGCCCCCCGCACATAGCCTGGGAGCCTCATTCTTCCTGTGCAGAGCAGGGTGCAGTGGGTACTGGTGCCTTTTGGTTAATGGAAATTCTTTCTTCCATTGTTCCAG
Seq C2 exon
GGGAAAGGCCATACAAATGTCAGACCTGCGAGCGAACCTTCACCTTGAAGCACAGCCTGGTTCGCCACCAGCGGATCCACCAGAAAGCCAGGCATGCCAAACACCACGGGAAGGACAGCGACAAGGAAGAGCGGGGTGAGGAGGACAGCGAGAATGAGTCCACCCACAGCGGCAACAACGCCGTCTCAGAGAACGAGGCTGAGCTGGCTCCCAATGCCAGCAACCACATGGCTGTCACCCGGAGCCGGAAGGAGGGCTTGGCCAGTGCCACCAAGGACTGCAGCCACAGGGAGGAGAAGGTCACGGCAGGGTGGCCGTCTGAGCCTGGCCAGGGTGACCTTAACCCAGAGAGCCCGGCGGCCCTGGGGCAGGACCTGCTGGAGCCGCGCAGCAAGAGGCCTGCCCACCCAATCCTGGCCACAGCTGATGGCGCCTCCCAGCTCGTGGGGATGGAGTGACAGCCTCAGTCCCCCTCAGCACAGACAAAAGCCAGCAGAGCAAAGCGTCTATACTTCATGGGGTTTCCTCAGTGCCCTTTGGCTGTTGAGGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAAGCAGGAGCGTGGCTGCTCGCTCAGTGCCATAGCCTTACCGCAGCCTGCGCGGGAGGCCACAGCCCGTGCCGATTCCAGTGCCTTAACTACTTACCGGATCCCTCCATATTATCATGGGTGTTGTATTTTTCCAAAATGACTTCTTAAACAAAACAAATATTATAATGAATTGTCTGGAGAGGACCTCTTCATTTGAGCATTAGCGTTATTTTGTATTGGTGTGTGTGAGCTTGTTCTTGTGAATCTGTGATAGCACCGTTTGTTCTGTGAGCTGGAAACAGAAGGAAAAAACATACCCTTGGGTACCCATAGCCAATAACTGGAAGAAAATGATGTGAATTTCATGTAAATGACCAGAGGAAAGATGGATAAGATGATAATTTCTTAAATAGACATTTTCCTTTTTTCTTTGTGCTTCATGGTGGAGCTGTCATCTGGTCCTTGGTATTACAGGATGTGGTTGATGAAGGTTTCCAATATGGTTTCAGGCCAAAACCAGGGAAGATTCTAGCTTCAGCCTCATGTCCATTTCCAGTCTGTCAGCATTAGACATGGTCACTGTTCAAGTTTCAAGACATCCATTCTTAACTATAGAGAAGAGTTACTCCCCTGGCGTCTTAACCTATGGAAAACATGCACGGATAGGATATATTTGATTGCCTCCTCTTCCCTTTCAGTATATGTATTATTAATATTATTATTATTATTATTATTATTAGTTCATCAGTTTGCTGTTCTCTGCAGTGAGCAGAATCAAATGGGCAATATTTGTCCTGGGAGACCTGTGCCGCACCCAGGTCCCCGTGTTAACGTGTGCCTGCGGTTGTGGTTGGCACCCTCGGGTGGTAGCTCTTCTACTGTAATGAGACAAGCCTTTCTTCTGTCACTGCAGAATTTAGAAGGGGCCGTGAGCAGTCTTCCCAAGCATGGTCCAGGAGCAGCTCAGAGAGGGTGGAGTGAGGATGCATGCATCCAGGGAACAGGCATCAAGAAGCCAGGGCCGTGCCTGGAGCACTGCAGAGATGACTTTGGAGAAAGCAAAGCAGTGACCCAGTGACCAGGCACATTACTCGTGAGCGAGGTATTCCCAGTCTTCCTGCTAAGCCTAATCCAAGCCTTACCCAGCTGTGCTACTGTCATTTGCAAAGCAAGGAAATACTACTACTGGTAATAAAACTACACATGCAAGATGTCAGATAAGAAATAGGTTTATATTTACCTTCCTGCGATGTGGGGTTGGTGCTTGAAGATAAATGTGCTGTTTCTAGTTTCTTAAATAGCCCACACCCCTGGATGCAAAAAGGCAGGGTTATTTTTACCCATGAGCATCCTGTGCAGGCAATAGACTTCCCTCACTGTCTCCGCCTGCAGGGAGGAGAATGTACCCCACTGCACCTGAGCTCCTGGTCCCTCAGCCAAGACCTCAGGGGTCCCCAGCCAGCCTGCTGCTGGGGACCCCTGTGCTTGCTGCAGTGTATGGAGCCTCTTGCCTTCCCCTGGGGAGGCACCCCTGTACCCCAGCTTCCTTCCCCTGGCCTTTTCTGGCCCCAGTGCTCCTCCTTTACATAGACTTGTTCACACAGAAACGTGCACGCCCCCTTTTCTCCGCCACTTCACCAGTTTCTGAAATCCAACCTCCCAGACTTCACAGGAAGATAGATATTCTTGAGATAATGAAAAGTGATATCTTCGCATACGAAAGGAAAAAAGGTTGAGGTATATATGATTTTTAACTGTATTAGGGGTGTATGAACCAGTTTAAAAACGAGGTTTTATTTACTGTAGAGATGAATGCAAATCAGAACCAATGATCCCTTGGCCTACTTAGTTAAAACCAGTTCATACATCCCTTAGGGTTTTTATTATTATTATTATTATTATTACAGTTGTTATTGTTGTTTTTGTTGTTATTATTATTTGGGGTTTCTTGTGTTTTTTCTTTGCGACTCTCCACACTAAACTTGCAATATTGTGGGGAGAAGCTGTGACTAAACTCTACGCTGCGGTGAGATGTAGCAGTAATCAGCTCCCAGCGACGTGTGTAGCTGGGGCTGCCGCTCGCAATAATCACTATTGATTTAAAGCTTTACTTAGCCTTGATCTGTACCCTCGTAGTCAATAAGGTCTTGCCACATTTTATTAGTGAGGTGGAGAAACGTATTATTTGTTTGTTGTTTTTGCCCTTCCCCCACCCCCCAATATTAAACTGTGAAATTTGTGATTTGTTTAAACTCTGGGTGAATCATAGCTTAGTTTGCATGTCCAGCTAATTTGTTTCTATACATTTTGTTTGATTCTCTTTCTCCTTCTCTCAGGGCTTTTACAAAAAAATATATATATATGGATCTTCTGAAAAGTTTTTTGAGGTGCAAGTTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTCTCATTGATTAATGGACATGATGCTGAGATTCAATCACTACATGAAACACCTGGCTGTGAAAACAAAACAACCCAGAGGGCTGTGTTCCAAGCAGCGCTGGGGAAGCTACGTAACAGTCGGATGCCAGTTTTGGAAGATTCACCATGCGTTCTGACCCTCTGTTCGTCTCTTTCCTCTCCTCTTTCTTCAAGAAGGAAATTGATCCTAGTGATTTCAGCCCATGCATTAAACAGGAAACAATAATAAATTTGTAGAATTCATATTTTTCTAAAGGGAACTTAAAAACTGCTGCTACATGTTATGTACAAAACTGGTTTATGCCACATGAACAGAGAATCACAAGTTTGGTTTTGGTACTTTTTGTTCCTCTTTGTATTCAGTTGTATAGAACTTCCAAATTCAGAATGAGAAGAAAGCTGTTCTGTATCAAACCATTTAAGCAATAAATGTTATATTTTAAAAGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782-RREB1:NM_001168344:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.916 A=NA C2=0.937
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=8.6),PF134651=zf-H2C2_2=PU(40.0=3.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(56.0=9.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCTCAGAGAAGAGCGAC
R:
GTTCTCTGAGACGGCGTTGTT
Band lengths:
351-1640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)