GgaINT0096712 @ galGal3
Intron Retention
Gene
ENSGALG00000012799 | RREB1
Description
NA
Coordinates
chr2:65834136-65839268:-
Coord C1 exon
chr2:65838522-65839268
Coord A exon
chr2:65835054-65838521
Coord C2 exon
chr2:65834136-65835053
Length
3468 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTATTTCCACTCTCTTGCAGGCG
3' ss Score
10.48
Exon sequences
Seq C1 exon
ACAGTCAGGCTGACACAGAGGCACCTGCTACAGGAGGTGAAGTCTTGGACCTGACGTCCTGTGAGAAGGAGCAGCCAGAGGAAGTCAGCGAGCTACCAGGGAGTGAGTGCAGCCCCCAGGAGGAGCAAAAGGCTGACTCCCCTCCAGCAGAAGAGGATGCCGAAGAAAAAGCAGATGAATATGAAGAGGGCCCTGAGGAAGATTCTGTAAGTAACAAAAGTCTTGACCTCAATTTTGCCAGCAAGTTAATGGACTTCAAGCTGGCAGAGAGTGACCAGAGCGCAGGCAGCAGTTCTCAGACTGAAAGGAAACATGCCTGTGATGTTTGTGGCAAAACCTTCAAGTTTGCTGGCACTCTTAGCCGTCACAAAAAGGCCCACATTCGTGAGGACAGAAAAGATGAAAGGAGCAGTGAGGATGAAAGCAAAAGCATCCAGGATGATGCAGGAGCTCCCTCGATGCAGGACTCCGGTCTTGAGCAGGAAGAGTCTCCGATGGACTTGAAGGTAGTGGAGTCTCCTCTGGACTGTGAGGCAACAGGAAAGGAGAATGAAGAGAGCGAAAGCATCTCTGAGGGGGAAGGCACAGAGAGAAAGTCCACTGAGAAGAGCAGTGATGACAAAATACCAAAGACTGATGAGGCTAAGAGTACTGCAAAAGCAGACAAAAGAAAGAAAGTCTGTACTGTGTGCAACAAGCGTTTCTGGTCTCTGCAAGATTTGACGCGACATATGCGGTCTCATACAG
Seq A exon
GTAAGAGGAGAATTCAGGGCAGAGCAGATAACGAGCAGATCTGCCACCACAGTGATGCATCTTCTCCGTAGGTGCACAATTACTGATAGTGCATGAAGTTGGAGACACTGCTTTTAGTCCCAAAGGTAGCTGTGAGGTGTCATCTCTTCCCCAGTCTTCCATGCTGCGCACAAAGCCTATTAAAGGAGCAGGAGTAGTTACACCACCACCTCATCTTCAGCTCCCAAACAGTTTTCCCCCATATTTGCTTACAGTGTTTGAAGGTTAGGACAAGTATGCAGATCTCCACGCAGTCCAGCTTCTCACTCCCTTCCCATCAAGTGTGCATGGCTGTACCTCTTCCCAGTATTTTCATGAGCAGTGGAGAAACATGGCAGCATGTAAGACTTCATTTCTGAGTGAAAGTTTAGAGAGAGCGTGTGTTTTGTCTGATTATCTGGGCCTGGTACTGGTAGTATGCTGGTGATACGCATGACCTTCTGCTTGAGTGAAAGGCACACCTACAATTTGCATTCTGCTCTTCCTCGGGCAGAGAATGTGGAATACAGGTAGTAAAATCTTTGTCTGATTACTCAGTAATTAAATTACTAGGGATTGCTTTATGCAGTAAATTTCAGCAGTGCATTGAGAAGGAGGTGAAGTCATGAGCCAGCTCAAGGGTGAATTAGTTGTGCATCCTCATTGATGATGTGTTTTACCTCTCCGTGGGCTGTTCTGGTGTGGGAAAACGAAGCAGTTTGACATTTCATGTCTTTTGAAATGCTTTCTGCTGAGGACAATATCTTTGTGATTAACTTTGGTTACAAAATATTTGTACTGTAATTGAAGAGGATGTTTAATAAACTACACCAAAGACTGGCGCCTTAACCATACTTTTTACCTTCGGAACTGACTTCTCAAGTGCAAAGATGACATGTTTTCATCCAGCATTGAGGACTCAAAGCTTGAGTGAAACAAGGGATGGATCCCACTCTTGTGGCTATTTTCATACTAACTCAGAAGATTTGGGAAGATTATAATATCTAAAGTGCTGAACGTTAGCCCTAAATGATACGCTGTTGTGTGCCTGTGATTCCCATACTGTGTGTTTTAAATGCATGCTAAGATACACAGACCATATCGATATGTCTGGTTTTTTGCTGTTTGTTTCTCTTGTTTGACACTGAAGGATGTTGTTATCATAGAAAATCGTAGAATAGGTTAGAATAGAATAGAAACCTGGGTCAGTTTTTCAAATGTAATATATTTAAACACCACCACTGCTTAGATAATGCGTTTTCAAATGCAGACTTTGCCTCAGTCCTGTGGTTGACTCAATACTGGTTGACCTTCCTCCTTCCTCTCTCCCTCCCATCCACTCAGATACATGGCAGAATGCTGTCTTTGTGTAATATTGCCTATACTTCGGTTTTAACCTTGCTTAATTCAAGATGAGTATAGAAAGTTTTTGGAATACTTTTTTTTCTTAGAAGAGGAACTTGTGGGGCACTTCTGAAGTGTGTAAGGAACCCCTGGCTGCTCAATGGCAGTCAGGCTGAAACATTTCCTTCACCCTGGCATGTAGTTCTGGGAGGCTCTGGGGTCCCAGTCACAGGGTGAGCTGCAGAGCTGCACTGTTTGGGGGTGGGCAAAGGGAGCTGACCAGAAAAGCTCCTGGCTGAAGCTCCAGGGCTGGAGCCCTGTCTTCTGTCAACAGCAAGGAGAAACTTCACTCAGAAGTGTCATGCTTCCCACAGACAGCAGGACTGGCTTACTCCACACCAGTGGTGTCCTAATGGAATTGCTCCACTGAGAAGCCTTTAGCAGTGGTAACCAGAAACACGGGATGAGGCTGTCAGGGTGGGACCTTTGGTTCTTCAGGGCTGGCAGGGCAGTGGTGGCAGGTAACAAGTACCTTGGGGCACTGTGCTTGGCCAGGAGCTGGGAGCAGTTTTGTCAGCAGAGGCATGGCTTTGTTTTTCAAGGAGCTTGTGCTAAGGGAACTCTTGAAACATTTCAGATGCAAAAAGTGGTTCTGAGAGCAGAGCAAATCCCATGTTGATTACAGCATAGGAGCAGCTCTGCAGCTGCTCTGAGGCTTAGGGCTGCAGAGTGAGTGGAAAGATTTTGTCTGGAGAGTAGCTTTTCTTGGACAGGTGTGAGGAGATCTCTTCAAGGGCTTTCAAGTGTTTCAGAAATTGGAGTAGAGCTCCAGCAGGCTGAAGAACATCAACAGATTTTTAACAGCATCCCAAGGTACATGCTCTCTATAACTCCCTAAAAGGAGGTTATAGCGAGGTAGGGGTTGGCCTCTTCTCTCAGGCAATAGTGGTAGGATGAGAGGTAATGGCCTTAAGCTGCGCCAGAGGAGGTTCAAGTTGGATACTGAGAAAAATTTCTTCTCAGAAAGAGCGGTGAGGCAGTGGCACAGGCTGCCCAGGGGCTGGTAGAGTCACCGTCCATGGAGGTATTCAGGAAATGTGTGGATGTGGCACTGAGGGACGTGGTTAGTGGACATGGTGGGCATGGGTTGGTGACCAGACTAGATGATCTTAGTGGGCTTTTACATCCTTTATGATTTTATGATTGTGTGTTTTTCATTTGCTCAGTAAACACTGACCACTGCTGACAGACACCTCTAGTGTCCCGTGAACGCCTAATAAATTTGGCTCCTTCAGCTGCTCTTTCTATTTTAAAACAGCAGTGCTGTCCTTCTGCTTCACAAAAAGAGTAGTAGTTGTTCTGTCAAGAGAAGTTCGTGACGGCTTCTCTTTGAGTTAGGTAAATAACTCATCTGCCAGTATCTAGGAGACGGAGATATTCTCTTATGTGCTGCTCAGTCTGCTTCCATTTTTAAGCCCTGCTGACCACAGGTCTCTGGTCAGTGTCCTATCTCAAATCTGCTCTCTCTGCATAAAGCAGGGCCTGTAACTTGGAGCCCCTTTGGTGAGCTGCTGTAGATGGGATGCTAACAAGCACCTGTGTCTTGTGGTCTTCCTCCCTCCTTAGTGCAGGGCTAAAAGAGAAGATACAGTGGGTACACCACATGCTACCCAGTGGTTTTACTGTGTGACCATGGAGATGATATGAGGAGGTGGGATGGAAAGCCCACCTTGACCCTAGAGTGTCGCTGCCTCCAGCCAGGTGGAGGAAAGGGAAAATCAGATTTATTGGACTGTGTGGGTTCAATGGCCTGGCACATCAGAACCACAGGATTATTAAGCTCTACTGGACACCAGTGCACAGTGTACTCCAATCTCATCAAGTTATAAAGGGGCAGAACCCATCAGTATTTCTGACAGGGCCCCCAGGGCCTTTATACCTGCTTGCGTACCACGATAGTACAGAAGCAAAAAGCCTGCATAGAAGGAACACCGAAGTTTGATGAAGGTACTGAGCTTCCAGCGTGGAGCATGTTAAGCTGCTTGAAACAAGAGGGAGATGTGTTTTTGACCTTATGGCTGACCTCGTATTTCCACTCTCTTGCAG
Seq C2 exon
GCGAGAGACCGTACAAGTGTCAAACCTGTGAACGGACCTTCACTCTGAAGCACAGCCTGGTTCGTCACCAGCGCATACACCAGAAAGTCAAAAATACTCGAAACCACGGGAAGGAGAGCGACAAGGAGGAGACCCAGTCGAGGTGCGGGGAAGACAGCGAAAATGAGTCAAGCCACAGTGGCACCAACCCCATCTCAGAAAACGAGTGCGACTTTGCGGGGGTTGTTGGCAGCCACCCATCCGGCACCAGAAGCCGAAAGGAGTCCCTGGTCGGAGCGGCCAAGGATGTGCCCTGCGAAGAGGAGAGGCCGAGCGGGCAAGGAGCCACTGCCGACCTCGTGGAGCCCGCCAAGAGCACACAGAAGCAGCCCGCAAAAGACCAGGAGCCTCGGGGTAGCTCCGAGCTAGAGAGACCGTCGGGTTTCATTCAAGACTTGCTGGAGATGCACAACAAAAAGTCTCCCATGAATCACATTCTTGCCTCTGCAGACAGCACGCCTCAGCTCTTGGGGGTAGAATGACTTGCGAGGAGGCTGGGCCCATCCCAGCACACAAACTGAAGCCAGCAGAGCAAGGTTTCCAGGGTCTCGTTTCAGAAGAGCGACCTACAGCTGTGGGGAGAGTATGGCAGACTGGATGCAGTGCCATATGCCTTTCAGTATAATAATGCAAGAGACTACAGTATATACTGATTTGAGTGCCTTACTACTTTATTAGATCTTTTGGTATCATAGTTTTGGTTTTTTTTTTTTCAAAAATGATTTTTTTTTTAAATATTTTAATGAATTATTTGGAGAGGACCTTTTTCATTTAAGCATTAATGTTACCTTTTGTATTGGTGTGTGTGAGCTTGGTCTTGTATATCTGATAGTCTCTGTGTTTGTTCTCTGAGCTGGAAACGGGGCAGTGGGGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799:ENSGALT00000037239:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.832 A=NA C2=0.922
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=9.2),PF134651=zf-H2C2_2=PU(40.0=4.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(56.0=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]